School of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki, 305-8572, Japan.
BMC Microbiol. 2021 Apr 15;21(1):114. doi: 10.1186/s12866-021-02180-8.
Geographically separated population growth of microbes is a common phenomenon in microbial ecology. Colonies are representative of the morphological characteristics of this structured population growth. Pattern formation by single colonies has been intensively studied, whereas the spatial distribution of colonies is poorly investigated.
The present study describes a first trial to address the questions of whether and how the spatial distribution of colonies determines the final colony size using the model microorganism Escherichia coli, colonies of which can be grown under well-controlled laboratory conditions. A computational tool for image processing was developed to evaluate colony density, colony size and size variation, and the Voronoi diagram was applied for spatial analysis of colonies with identical space resources. A positive correlation between the final colony size and the Voronoi area was commonly identified, independent of genomic and nutritional differences, which disturbed the colony size and size variation.
This novel finding of a universal correlation between the spatial distribution and colony size not only indicated the fair distribution of spatial resources for monogenetic colonies growing with identical space resources but also indicated that the initial localization of the microbial colonies decided by chance determined the fate of the subsequent population growth. This study provides a valuable example for quantitative analysis of the complex microbial ecosystems by means of experimental ecology.
微生物在地理上的分离生长是微生物生态学中的一个常见现象。集落代表了这种结构化生长的形态特征。对单个集落的模式形成已经进行了深入研究,而对集落的空间分布则研究甚少。
本研究首次尝试使用模式微生物大肠杆菌来解决以下问题:集落的空间分布是否以及如何决定最终的集落大小,大肠杆菌的集落可以在良好控制的实验室条件下生长。开发了一种用于图像处理的计算工具,以评估集落密度、集落大小和大小变化,并应用 Voronoi 图对具有相同空间资源的集落进行空间分析。普遍发现,最终集落大小与 Voronoi 面积之间存在正相关关系,这与基因组和营养差异无关,这些差异会干扰集落大小和大小变化。
这一新颖的发现表明,在具有相同空间资源的单基因集落的生长中,空间资源的公平分配不仅表明了空间资源的公平分配,而且表明了微生物集落的初始定位是由偶然决定的,这决定了随后的种群生长的命运。本研究为通过实验生态学对复杂微生物生态系统进行定量分析提供了一个有价值的范例。