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通过定向蛋白质进化增强的 Cas9 催化酶。

Catalytically Enhanced Cas9 through Directed Protein Evolution.

机构信息

Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida, USA; Florida State University, Tallahassee, Florida, USA.

Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida, USA; and Florida State University, Tallahassee, Florida, USA.

出版信息

CRISPR J. 2021 Apr;4(2):223-232. doi: 10.1089/crispr.2020.0092.

DOI:10.1089/crispr.2020.0092
PMID:33876948
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8182482/
Abstract

Guided by the extensive knowledge of CRISPR-Cas9 molecular mechanisms, protein engineering can be an effective method in improving CRISPR-Cas9 toward desired traits different from those of their natural forms. Here, we describe a directed protein evolution method that enables selection of catalytically enhanced CRISPR-Cas9 variants (CECas9) by targeting a shortened protospacer within a toxic gene. We demonstrate the effectiveness of this method with a previously characterized Type II-C Cas9 from (AceCas9) and show by enzyme kinetics an up to fourfold improvement of the catalytic efficiency by AceCECas9. We further evolved the more widely used Cas9 (SpyCas9) and demonstrated a noticeable improvement in the SpyCECas9-facilitated homology directed repair-based gene insertion in human colon cancer cells.

摘要

在对 CRISPR-Cas9 分子机制有了广泛了解的基础上,蛋白质工程可以成为一种有效的方法,用于改善 CRISPR-Cas9,使其具有不同于天然形式的理想特性。在这里,我们描述了一种定向蛋白质进化方法,该方法可以通过靶向毒性基因内缩短的原间隔序列来选择催化增强的 CRISPR-Cas9 变体(CECas9)。我们用之前从 Staphylococcus aureus 中鉴定出的 II-C 型 Cas9(AceCas9)来验证该方法的有效性,并通过酶动力学显示 AceCECas9 的催化效率提高了四倍。我们进一步对更广泛使用的 Cas9(SpyCas9)进行了进化,并在人结肠癌细胞中证明了 SpyCECas9 促进同源定向修复的基因插入有明显改善。

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本文引用的文献

1
The molecular basis for recognition of 5'-NNNCC-3' PAM and its methylation state by Acidothermus cellulolyticus Cas9.解纤维梭菌 Cas9 识别 5'-NNNCC-3' PAM 及其甲基化状态的分子基础。
Nat Commun. 2020 Dec 11;11(1):6346. doi: 10.1038/s41467-020-20204-1.
2
Development of both type I-B and type II CRISPR/Cas genome editing systems in the cellulolytic bacterium .纤维素分解菌中I-B型和II型CRISPR/Cas基因组编辑系统的开发。
Metab Eng Commun. 2019 Nov 28;10:e00116. doi: 10.1016/j.mec.2019.e00116. eCollection 2020 Jun.
3
Harnessing Genome Editing Techniques to Engineer Disease Resistance in Plants.利用基因组编辑技术培育植物抗病性
Front Plant Sci. 2019 May 7;10:550. doi: 10.3389/fpls.2019.00550. eCollection 2019.
4
sgRNA Sequence Motifs Blocking Efficient CRISPR/Cas9-Mediated Gene Editing.sgRNA 序列基序阻碍高效的 CRISPR/Cas9 介导的基因编辑。
Cell Rep. 2019 Jan 29;26(5):1098-1103.e3. doi: 10.1016/j.celrep.2019.01.024.
5
Directed evolution studies of a thermophilic Type II-C Cas9.嗜热II-C型Cas9的定向进化研究
Methods Enzymol. 2019;616:265-288. doi: 10.1016/bs.mie.2018.10.029. Epub 2018 Dec 28.
6
Key role of the REC lobe during CRISPR-Cas9 activation by 'sensing', 'regulating', and 'locking' the catalytic HNH domain.REC 结构域在 CRISPR-Cas9 激活过程中通过“感应”、“调节”和“锁定”催化 HNH 结构域发挥关键作用。
Q Rev Biophys. 2018;51. doi: 10.1017/S0033583518000070. Epub 2018 Aug 3.
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8
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