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sp. nov.,一种来自太平洋海底/深海环境的中温、铁(III)还原细菌,对属的描述进行了修正。

sp. nov., a mesophilic, iron(III)-reducing bacterium from seafloor/subseafloor environments in the Pacific Ocean, and emended description of the genus .

机构信息

Geophysical Laboratory, Carnegie Institution of Washington, Washington, DC 20015, USA.

Department of Earth Sciences, University of Southern California, Los Angeles, CA 90089, USA.

出版信息

Int J Syst Evol Microbiol. 2021 Apr;71(4). doi: 10.1099/ijsem.0.004739.

DOI:10.1099/ijsem.0.004739
PMID:33877046
Abstract

A novel mesophilic, anaerobic, mixotrophic bacterium, with designated strains EPR-M and HR-1, was isolated from a semi-extinct hydrothermal vent at the East Pacific Rise and from an Fe-mat at Lō'ihi Seamount, respectively. The cells were Gram-negative, pleomorphic rods of about 2.0 µm in length and 0.5 µm in width. Strain EPR-M grew between 25 and 45 °C (optimum, 37.5-40 °C), 10 and 50 g l NaCl (optimum, 15-20 g l) and pH 5.5 and 8.6 (optimum, pH 6.4). Strain HR-1 grew between 20 and 45 °C (optimum, 37.5-40 °C), 10 and 50 g l NaCl (optimum, 15-25 g l) and pH 5.5 and 8.6 (optimum, pH 6.4). Shortest generation times with H as the primary electron donor, CO as the carbon source and ferric citrate as terminal electron acceptor were 6.7 and 5.5 h for EPR-M and HR-1, respectively. Fe(OH), MnO, AsO , SO , SeO , SO , S and NO were also used as terminal electron acceptors. Acetate, yeast extract, formate, lactate, tryptone and Casamino acids also served as both electron donors and carbon sources. G+C content of the genomic DNA was 59.4 mol% for strain EPR-M and 59.2 mol% for strain HR-1. Phylogenetic and phylogenomic analyses indicated that both strains were closely related to each other and to , within the class δ- (now within the class ). Based on phylogenetic and phylogenomic analyses in addition to physiological and biochemical characteristics, both strains were found to represent a novel species within the genus , for which the name sp. nov. is proposed. is represented by type strain EPR-M (=JCM 32109=KCTC 15831=ATCC TSD-173) and strain HR-1 (=JCM 32110=KCTC 15832).

摘要

从东太平洋海隆一个半灭绝的热液喷口和洛希海底山的一个铁基质中,分别分离到一株新型嗜温和厌氧兼性营养细菌,命名为菌株 EPR-M 和 HR-1。细胞革兰氏阴性,多形杆状,长约 2.0 µm,宽 0.5 µm。菌株 EPR-M 在 25-45°C(最佳温度 37.5-40°C)、10-50 g l NaCl(最佳浓度 15-20 g l)和 pH5.5-8.6(最佳 pH6.4)条件下生长。菌株 HR-1 在 20-45°C(最佳温度 37.5-40°C)、10-50 g l NaCl(最佳浓度 15-25 g l)和 pH5.5-8.6(最佳 pH6.4)条件下生长。以 H 为电子供体,CO 为碳源,高铁柠檬酸为末端电子受体时,EPR-M 和 HR-1 的最短代时分别为 6.7 和 5.5 h。Fe(OH)、MnO、AsO、SO、SeO、SO、S 和 NO 也可作为末端电子受体。乙酸盐、酵母提取物、甲酸盐、乳酸盐、胰蛋白胨和氨基酸也可作为电子供体和碳源。菌株 EPR-M 和 HR-1 的基因组 DNA G+C 含量分别为 59.4 mol%和 59.2 mol%。系统发育和系统基因组分析表明,两株菌彼此之间以及与属内的 关系密切。基于系统发育和系统基因组分析以及生理生化特性,两株菌均代表一个新种,命名为 sp. nov.。该种的模式菌株为 EPR-M(=JCM 32109=KCTC 15831=ATCC TSD-173)和 HR-1(=JCM 32110=KCTC 15832)。

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