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基于影像组学的特发性肺纤维化评估与基因突变及患者生存率相关。

Radiomics-based assessment of idiopathic pulmonary fibrosis is associated with genetic mutations and patient survival.

作者信息

Budzikowski Jorie D, Foy Joseph J, Rashid Ahmed A, Chung Jonathan H, Noth Imre, Armato Samuel G

机构信息

University of Chicago, Department of Radiology, Chicago, Illinois, United States.

University of Virginia, Charlottesville, Virginia, United States.

出版信息

J Med Imaging (Bellingham). 2021 May;8(3):031903. doi: 10.1117/1.JMI.8.3.031903. Epub 2021 Apr 19.

DOI:10.1117/1.JMI.8.3.031903
PMID:33889657
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8054271/
Abstract

The purpose of our study was to combine differences in radiomic features extracted from lung regions in the computed tomography (CT) scans of patients diagnosed with idiopathic pulmonary fibrosis (IPF) to identify associations with genetic variations and patient survival. A database of CT scans and genomic data from 169 patients diagnosed with IPF was collected retrospectively. Six region-of-interest pairs (three per lung, positioned posteriorly, anteriorly, and laterally) were placed in each of three axial CT sections for each patient. Thirty-one features were used in logistic regression to classify patients' genetic mutation status; classification performance was evaluated through the area under the receiver operating characteristic (ROC) curve [average area under the ROC curve (AUC)]. Kaplan-Meier (KM) survival curve models quantified the ability of each feature to differentiate between survival curves based on feature-specific thresholds. Nine first-order texture features and one fractal feature were correlated with TOLLIP-1 (rs4963062) mutations (AUC: 0.54 to 0.74), and five Laws' filter features were correlated with TOLLIP-2 (rs5743905) mutations (AUC: 0.53 to 0.70). None of the features analyzed were found to be correlated with MUC5B mutations. First-order and fractal features demonstrated the greatest discrimination between KM curves. A radiomics approach for the correlation of patient genetic mutations with image texture features has potential as a biomarker. These features also may serve as prognostic indicators using a survival curve modeling approach in which the combination of radiomic features and genetic mutations provides an enhanced understanding of the interaction between imaging phenotype and patient genotype on the progression and treatment of IPF.

摘要

我们研究的目的是结合从诊断为特发性肺纤维化(IPF)患者的计算机断层扫描(CT)肺部区域提取的放射组学特征差异,以确定与基因变异和患者生存的关联。回顾性收集了169例诊断为IPF患者的CT扫描和基因组数据库。为每位患者在三个轴向CT切片中的每一个上放置六对感兴趣区域(每侧肺三个,分别位于后部、前部和外侧)。使用31个特征进行逻辑回归以对患者的基因突变状态进行分类;通过受试者操作特征(ROC)曲线下面积[ROC曲线下平均面积(AUC)]评估分类性能。Kaplan-Meier(KM)生存曲线模型根据特征特异性阈值量化了每个特征区分生存曲线的能力。九个一阶纹理特征和一个分形特征与TOLLIP-1(rs4963062)突变相关(AUC:0.54至0.74),五个Laws滤波器特征与TOLLIP-2(rs5743905)突变相关(AUC:0.53至0.70)。未发现分析的任何特征与MUC5B突变相关。一阶和分形特征在KM曲线之间表现出最大的区分度。将患者基因突变与图像纹理特征相关联的放射组学方法有作为生物标志物的潜力。这些特征还可以作为使用生存曲线建模方法的预后指标,其中放射组学特征和基因突变的组合可增强对IPF进展和治疗中成像表型与患者基因型之间相互作用的理解。

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