• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于计算极化率和核磁共振屏蔽的DLPNO-MP2二阶导数。

DLPNO-MP2 second derivatives for the computation of polarizabilities and NMR shieldings.

作者信息

Stoychev Georgi L, Auer Alexander A, Gauss Jürgen, Neese Frank

机构信息

Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.

Department Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, 55128 Mainz, Germany.

出版信息

J Chem Phys. 2021 Apr 28;154(16):164110. doi: 10.1063/5.0047125.

DOI:10.1063/5.0047125
PMID:33940835
Abstract

We present a derivation and efficient implementation of the formally complete analytic second derivatives for the domain-based local pair natural orbital second order Møller-Plesset perturbation theory (MP2) method, applicable to electric or magnetic field-response properties but not yet to harmonic frequencies. We also discuss the occurrence and avoidance of numerical instability issues related to singular linear equation systems and near linear dependences in the projected atomic orbital domains. A series of benchmark calculations on medium-sized systems is performed to assess the effect of the local approximation on calculated nuclear magnetic resonance shieldings and the static dipole polarizabilities. Relative deviations from the resolution of the identity-based MP2 (RI-MP2) reference for both properties are below 0.5% with the default truncation thresholds. For large systems, our implementation achieves quadratic effective scaling, is more efficient than RI-MP2 starting at 280 correlated electrons, and is never more than 5-20 times slower than the equivalent Hartree-Fock property calculation. The largest calculation performed here was on the vancomycin molecule with 176 atoms, 542 correlated electrons, and 4700 basis functions and took 3.3 days on 12 central processing unit cores.

摘要

我们给出了基于域的局部对自然轨道二阶莫勒-普列斯特定则微扰理论(MP2)方法形式上完整的解析二阶导数的推导和高效实现,该方法适用于电场或磁场响应性质,但不适用于谐波频率。我们还讨论了与奇异线性方程组以及投影原子轨道域中的近线性相关性相关的数值不稳定性问题的出现和避免。对中型系统进行了一系列基准计算,以评估局部近似对计算的核磁共振屏蔽和静态偶极极化率的影响。在默认截断阈值下,这两种性质与基于单位分解的MP2(RI-MP2)参考值的相对偏差均低于0.5%。对于大型系统,我们的实现实现了二次有效缩放,从280个相关电子开始比RI-MP2更高效,并且比等效的哈特里-福克性质计算慢不超过5至20倍。这里进行的最大计算是针对具有176个原子、542个相关电子和4700个基函数的万古霉素分子,在12个中央处理器核心上花费了3.3天时间。

相似文献

1
DLPNO-MP2 second derivatives for the computation of polarizabilities and NMR shieldings.用于计算极化率和核磁共振屏蔽的DLPNO-MP2二阶导数。
J Chem Phys. 2021 Apr 28;154(16):164110. doi: 10.1063/5.0047125.
2
Efficient low-scaling computation of NMR shieldings at the second-order Møller-Plesset perturbation theory level with Cholesky-decomposed densities and an attenuated Coulomb metric.用 Cholesky 分解密度和衰减库仑度量高效低标度计算二阶 Møller-Plesset 微扰理论水平的 NMR 屏蔽。
J Chem Phys. 2021 Dec 14;155(22):224107. doi: 10.1063/5.0069956.
3
Analytical gradient for the domain-based local pair natural orbital second order Møller-Plesset perturbation theory method (DLPNO-MP2).基于域的定域对自然轨道二阶莫勒-普莱塞特微扰理论方法(DLPNO-MP2)的分析梯度
J Chem Phys. 2019 Apr 28;150(16):164102. doi: 10.1063/1.5086544.
4
Efficient linear-scaling second-order Møller-Plesset perturbation theory: The divide-expand-consolidate RI-MP2 model.高效线性标度二阶莫勒-普莱塞特微扰理论:划分-扩展-合并RI-MP2模型。
J Chem Phys. 2016 Feb 7;144(5):054102. doi: 10.1063/1.4940732.
5
Sparse maps—A systematic infrastructure for reduced-scaling electronic structure methods. I. An efficient and simple linear scaling local MP2 method that uses an intermediate basis of pair natural orbitals.稀疏映射——一种用于降尺度电子结构方法的系统基础设施。I. 一种高效且简单的线性标度局域MP2方法,该方法使用对自然轨道的中间基。
J Chem Phys. 2015 Jul 21;143(3):034108. doi: 10.1063/1.4926879.
6
Efficient and Accurate Prediction of Nuclear Magnetic Resonance Shielding Tensors with Double-Hybrid Density Functional Theory.采用双杂化密度泛函理论高效准确预测核磁共振屏蔽张量。
J Chem Theory Comput. 2018 Sep 11;14(9):4756-4771. doi: 10.1021/acs.jctc.8b00624. Epub 2018 Aug 15.
7
Analytical Gradient Using Cluster-in-Molecule RI-MP2 Method for the Geometry Optimizations of Large Systems.使用分子内簇RI-MP2方法进行大体系几何优化的分析梯度
J Chem Theory Comput. 2024 May 14;20(9):3626-3636. doi: 10.1021/acs.jctc.4c00087. Epub 2024 Apr 16.
8
Derivation of general analytic gradient expressions for density-fitted post-Hartree-Fock methods: an efficient implementation for the density-fitted second-order Møller-Plesset perturbation theory.密度拟合后Hartree-Fock方法的一般解析梯度表达式的推导:密度拟合二阶Møller-Plesset微扰理论的高效实现
J Chem Phys. 2014 Sep 28;141(12):124108. doi: 10.1063/1.4896235.
9
RI-MP2 Gradient Calculation of Large Molecules Using the Fragment Molecular Orbital Method.使用片段分子轨道方法对大分子进行RI-MP2梯度计算
J Phys Chem Lett. 2012 Feb 2;3(3):375-9. doi: 10.1021/jz201697x. Epub 2012 Jan 18.
10
Resolution-of-the-identity second-order Møller-Plesset perturbation theory with complex basis functions: Benchmark calculations and applications to strong-field ionization of polyacenes.采用复基函数的单位分解二阶莫勒-普莱塞特微扰理论:基准计算及在多并苯强场电离中的应用
J Chem Phys. 2020 May 7;152(17):174103. doi: 10.1063/5.0004843.

引用本文的文献

1
The interplay of density functional selection and crystal structure for accurate NMR chemical shift predictions.用于精确核磁共振化学位移预测的密度泛函选择与晶体结构的相互作用
Faraday Discuss. 2025 Jan 8;255(0):119-142. doi: 10.1039/d4fd00072b.
2
Low-Scaling, Efficient and Memory Optimized Computation of Nuclear Magnetic Resonance Shieldings within the Random Phase Approximation Using Cholesky-Decomposed Densities and an Attenuated Coulomb Metric.利用Cholesky分解密度和衰减库仑度量在随机相位近似内进行低尺度、高效且内存优化的核磁共振屏蔽计算。
J Phys Chem A. 2024 Sep 19;128(37):7950-7965. doi: 10.1021/acs.jpca.4c02773. Epub 2024 Sep 6.
3
Stereocontrolled Synthesis and Conformational Analysis of a Series of Disaccharides α,β-d-GlcA-(1→3)-α-L-Fuc.
一系列二糖α,β-d-葡萄糖醛酸-(1→3)-α-L-岩藻糖的立体控制合成及构象分析
Molecules. 2023 Nov 13;28(22):7571. doi: 10.3390/molecules28227571.
4
Assessment of DLPNO-MP2 Approximations in Double-Hybrid DFT.双杂化密度泛函理论中DLPNO-MP2近似的评估
J Chem Theory Comput. 2023 Nov 14;19(21):7695-7703. doi: 10.1021/acs.jctc.3c00896. Epub 2023 Oct 20.
5
Corrigendum: Coupled cluster theory on modern heterogeneous supercomputers.勘误:现代异构超级计算机上的耦合簇理论。
Front Chem. 2023 Aug 15;11:1256510. doi: 10.3389/fchem.2023.1256510. eCollection 2023.
6
Dissecting the Molecular Origin of -Tensor Heterogeneity and Strain in Nitroxide Radicals in Water: Electron Paramagnetic Resonance Experiment versus Theory.剖析水中氮氧化物自由基中张量异质性和应变的分子起源:电子顺磁共振实验与理论
J Phys Chem A. 2023 Aug 10;127(31):6447-6466. doi: 10.1021/acs.jpca.3c02879. Epub 2023 Jul 31.
7
Coupled cluster theory on modern heterogeneous supercomputers.现代异构超级计算机上的耦合簇理论
Front Chem. 2023 Jun 14;11:1154526. doi: 10.3389/fchem.2023.1154526. eCollection 2023.
8
An in-silico NMR laboratory for nuclear magnetic shieldings computed via finite fields: Exploring nucleus-specific renormalizations of MP2 and MP3.基于有限场计算的核磁共振屏蔽的计算化学实验室:探索 MP2 和 MP3 的核特异性重整化。
J Chem Phys. 2023 Apr 28;158(16). doi: 10.1063/5.0145130.
9
Are Accelerated and Enhanced Wave Function Methods Accurate to Compute Static Linear and Nonlinear Optical Properties?加速和增强波函数方法在计算静态线性和非线性光学性质方面是否准确?
J Chem Theory Comput. 2023 Mar 28;19(6):1753-1764. doi: 10.1021/acs.jctc.2c01212. Epub 2023 Mar 2.
10
DFT exchange: sharing perspectives on the workhorse of quantum chemistry and materials science.DFT 交换:对量子化学和材料科学的主力的观点分享。
Phys Chem Chem Phys. 2022 Dec 7;24(47):28700-28781. doi: 10.1039/d2cp02827a.