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一个杂交物种×的完整叶绿体基因组特征分析 。

Characterization of the complete chloroplast genome of a hybrid species × .

作者信息

Zhao Yiran, Li Zhilin, Cheng Longjie, Li Yefang, He Fengmei, Wang Yuying

机构信息

College of Horticulture and Landscape, Yunnan Agricultural University, Kunming, China.

出版信息

Mitochondrial DNA B Resour. 2021 Apr 23;6(4):1492-1493. doi: 10.1080/23802359.2020.1848467.

DOI:10.1080/23802359.2020.1848467
PMID:33969204
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8079062/
Abstract

'' ×  '' is a hybrid species with important ornamental In the research, Illumina high-throughput sequencing technologies was used to sequence the chloroplastic genome of '' ×  ''. The genome features of '' ×  '' and the phylogenetic relationships were reported and established. The total length of the complete chloroplast genome is 154,741 bp, consisting of a pair of inverse duplication regions 26,968 bp, a large single-copy region 84,410 bp and a small single-copy region 16,395 bp. The complete genome contains 73 protein-coding genes (PCGs), The entire genome contains 73 genes that encode proteins, 30 tRNA genes and 4 rRNA genes. The phylogenetic tree revealed that '' ×  '' is more closely related to

摘要

“ × ”是一种具有重要观赏价值的杂交物种。在该研究中,利用Illumina高通量测序技术对“ × ”的叶绿体基因组进行测序。报道并建立了“ × ”的基因组特征及系统发育关系。完整叶绿体基因组的总长度为154,741 bp,由一对26,968 bp的反向重复区域、一个84,410 bp的大单拷贝区域和一个16,395 bp的小单拷贝区域组成。完整基因组包含73个蛋白质编码基因(PCGs),整个基因组包含73个编码蛋白质的基因、30个tRNA基因和4个rRNA基因。系统发育树显示“ × ”与……关系更为密切

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c802/8079062/6199af3a7729/TMDN_A_1848467_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c802/8079062/6199af3a7729/TMDN_A_1848467_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c802/8079062/6199af3a7729/TMDN_A_1848467_F0001_B.jpg

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本文引用的文献

1
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.