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与m6A相关的长链非编码RNA是转移性皮肤黑色素瘤预后的潜在生物标志物。

m6A-Related lncRNAs Are Potential Biomarkers for the Prognosis of Metastatic Skin Cutaneous Melanoma.

作者信息

Huang Suyang, Lyu Shanshan, Gao Zhe, Zha Weifeng, Wang Ping, Shan Yunyun, He Jianzhong, Li Yang

机构信息

Department of Dermatology, The Third People's Hospital of Hangzhou, Hangzhou, China.

Department of Pathology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China.

出版信息

Front Mol Biosci. 2021 May 5;8:687760. doi: 10.3389/fmolb.2021.687760. eCollection 2021.

Abstract

The incidence of skin cutaneous melanoma (SKCM) has risen more rapidly than any other solid tumor in the past few decades. The median survival for metastatic melanoma is only six to nine months and the 5°years survival rate of patients with conventional therapy is less than 5%. Our aim was to reveal the potential molecular mechanism in m6A modification of lncRNA and provide candidate prognostic biomarkers for metastatic SKCM. lncRNAs expression level was obtained by re-annotation in TCGA and CCLE datasets. m6A-related lncRNAs were selected though correlation analysis. Univariate cox regression analysis was used to screen out independent prognostic factors. LASSO Cox regression was performed to construct an m6A-related lncRNA model (m6A-LncM). Univariate survival analysis and ROC curve were used to assess the prognostic efficacy of this model and candidate lncRNAs. Enrichment analysis was used to explore the candidate genes' functions. We obtained 1,086 common m6A-related lncRNAs after Pearson correlation analysis in both two datasets. 130 out of the 1,086 lncRNAs are independent prognostic factors. 24 crucial lncRNAs were filtered after LASSO Cox regression analysis. All the m6A-LncM and the 24 lncRNAs were related to overall survival. Stratified survival analysis of m6A-LncM showed that the model retains its prognostic efficacy in recurrence, radiation therapy and other subgroups. Enrichment analysis also found that these lncRNAs were immune associated. Here, we obtained 24 crucial lncRNAs that may be potential biomarkers to predict survival of metastatic SKCM and may provide a new insight to improve the prognosis of it.

摘要

在过去几十年中,皮肤黑色素瘤(SKCM)的发病率增长速度超过了任何其他实体瘤。转移性黑色素瘤的中位生存期仅为6至9个月,传统治疗患者的5年生存率低于5%。我们的目的是揭示lncRNA的m6A修饰中的潜在分子机制,并为转移性SKCM提供候选预后生物标志物。通过对TCGA和CCLE数据集进行重新注释获得lncRNAs表达水平。通过相关性分析选择与m6A相关的lncRNAs。使用单变量cox回归分析筛选出独立的预后因素。进行LASSO Cox回归以构建与m6A相关的lncRNA模型(m6A-LncM)。使用单变量生存分析和ROC曲线评估该模型和候选lncRNAs的预后效果。使用富集分析来探索候选基因的功能。在对两个数据集进行Pearson相关性分析后,我们获得了1086个常见的与m6A相关的lncRNAs。1086个lncRNAs中的130个是独立的预后因素。经过LASSO Cox回归分析后筛选出24个关键lncRNAs。所有的m6A-LncM和这24个lncRNAs都与总生存期相关。m6A-LncM的分层生存分析表明,该模型在复发、放疗和其他亚组中保留了其预后效果。富集分析还发现这些lncRNAs与免疫相关。在这里,我们获得了24个关键lncRNAs,它们可能是预测转移性SKCM生存的潜在生物标志物,并可能为改善其预后提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f900/8131514/d69b394b4149/fmolb-08-687760-g001.jpg

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