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全基因组加倍的中性速率在酵母物种及其杂种中有所不同。

The neutral rate of whole-genome duplication varies among yeast species and their hybrids.

机构信息

Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, QC, Canada.

Regroupement Québécois de Recherche sur la Fonction, l'Ingénierie et les Applications des Protéines, (PROTEO), Université Laval, Québec, QC, Canada.

出版信息

Nat Commun. 2021 May 25;12(1):3126. doi: 10.1038/s41467-021-23231-8.

DOI:10.1038/s41467-021-23231-8
PMID:34035259
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8149824/
Abstract

Hybridization and polyploidization are powerful mechanisms of speciation. Hybrid speciation often coincides with whole-genome duplication (WGD) in eukaryotes. This suggests that WGD may allow hybrids to thrive by increasing fitness, restoring fertility and/or increasing access to adaptive mutations. Alternatively, it has been suggested that hybridization itself may trigger WGD. Testing these models requires quantifying the rate of WGD in hybrids without the confounding effect of natural selection. Here we show, by measuring the spontaneous rate of WGD of more than 1300 yeast crosses evolved under relaxed selection, that some genotypes or combinations of genotypes are more prone to WGD, including some hybrids between closely related species. We also find that higher WGD rate correlates with higher genomic instability and that WGD increases fertility and genetic variability. These results provide evidence that hybridization itself can promote WGD, which in turn facilitates the evolution of hybrids.

摘要

杂交和多倍体化是物种形成的强大机制。在真核生物中,杂交种形成通常与全基因组加倍 (WGD) 同时发生。这表明 WGD 可以通过提高适应性、恢复育性和/或增加适应性突变的获得来促进杂种的生存。或者,有人认为杂交本身可能会引发 WGD。要验证这些模型,需要在没有自然选择混杂效应的情况下,定量测定杂种中的 WGD 率。在这里,我们通过测量在放松选择下进化的 1300 多个酵母杂交的自发 WGD 率,表明某些基因型或基因型组合更容易发生 WGD,包括一些亲缘关系密切的物种之间的杂种。我们还发现,较高的 WGD 率与较高的基因组不稳定性相关,并且 WGD 提高了育性和遗传变异性。这些结果为杂交本身可以促进 WGD 的观点提供了证据,而 WGD 又促进了杂种的进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/a7d3352218a9/41467_2021_23231_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/b5df80eda67b/41467_2021_23231_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/7956ce58d26b/41467_2021_23231_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/f8e68b22e06b/41467_2021_23231_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/a7d3352218a9/41467_2021_23231_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/b5df80eda67b/41467_2021_23231_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/7956ce58d26b/41467_2021_23231_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/f8e68b22e06b/41467_2021_23231_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4999/8149824/a7d3352218a9/41467_2021_23231_Fig4_HTML.jpg

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Curr Biol. 2021 Feb 22;31(4):722-732.e5. doi: 10.1016/j.cub.2020.11.016. Epub 2020 Dec 9.
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A yeast living ancestor reveals the origin of genomic introgressions.
EMBO Rep. 2025 Feb;26(3):602-612. doi: 10.1038/s44319-024-00353-w. Epub 2025 Jan 2.
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Hybrid adaptation is hampered by Haldane's sieve.杂种适应受到哈代-温伯格定律的阻碍。
Nat Commun. 2024 Nov 28;15(1):10319. doi: 10.1038/s41467-024-54105-4.
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The genomic landscape of transposable elements in yeast hybrids is shaped by structural variation and genotype-specific modulation of transposition rate.酵母杂种中转座元件的基因组景观由结构变异和转座率的基因型特异性调节形成。
Elife. 2024 Feb 27;12:RP89277. doi: 10.7554/eLife.89277.
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Expectations of duplicate gene retention under the gene duplicability hypothesis.根据基因可复制性假说对重复基因保留的预期。
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