• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于适应性免疫受体谱分析的标准化和解释的生物学控制。

Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling.

机构信息

University Children's Hospital and the Children's Research Center, University of Zurich, Zurich, Switzerland.

CRTD Center for Regenerative Therapies Dresden, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany.

出版信息

Elife. 2021 May 26;10:e66274. doi: 10.7554/eLife.66274.

DOI:10.7554/eLife.66274
PMID:34037521
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8154019/
Abstract

Use of adaptive immune receptor repertoire sequencing (AIRR-seq) has become widespread, providing new insights into the immune system with potential broad clinical and diagnostic applications. However, like many high-throughput technologies, it comes with several problems, and the AIRR Community was established to understand and help solve them. We, the AIRR Community's Biological Resources Working Group, have surveyed scientists about the need for standards and controls in generating and annotating AIRR-seq data. Here, we review the current status of AIRR-seq, provide the results of our survey, and based on them, offer recommendations for developing AIRR-seq standards and controls, including future work.

摘要

使用适应性免疫受体库测序(AIRR-seq)已经变得非常普遍,为免疫系统提供了新的见解,并具有广泛的临床和诊断应用潜力。然而,与许多高通量技术一样,它也存在一些问题,因此建立了 AIRR 社区来理解和帮助解决这些问题。我们,AIRR 社区的生物资源工作组,已经调查了科学家们在生成和注释 AIRR-seq 数据方面对标准和对照的需求。在这里,我们回顾了 AIRR-seq 的现状,提供了我们的调查结果,并在此基础上,为制定 AIRR-seq 标准和对照提出了建议,包括未来的工作。

相似文献

1
Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling.用于适应性免疫受体谱分析的标准化和解释的生物学控制。
Elife. 2021 May 26;10:e66274. doi: 10.7554/eLife.66274.
2
AIRR Community Standardized Representations for Annotated Immune Repertoires.AIRR 社区注释免疫受体的标准化表示。
Front Immunol. 2018 Sep 28;9:2206. doi: 10.3389/fimmu.2018.02206. eCollection 2018.
3
Adaptive Immune Receptor Repertoire (AIRR) Community Guide to TR and IG Gene Annotation.适应性免疫受体库(AIRR)TR 和 IG 基因注释社区指南。
Methods Mol Biol. 2022;2453:279-296. doi: 10.1007/978-1-0716-2115-8_16.
4
Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming.推断的免疫球蛋白受体基因等位变体:一种用于评估、记录和命名的系统。
Front Immunol. 2019 Mar 18;10:435. doi: 10.3389/fimmu.2019.00435. eCollection 2019.
5
AIRR Community Guide to Planning and Performing AIRR-Seq Experiments.AIRR 社区 AIRR-Seq 实验规划和执行指南
Methods Mol Biol. 2022;2453:261-278. doi: 10.1007/978-1-0716-2115-8_15.
6
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.CAIRR 管道用于向国家生物技术信息中心存储库提交符合标准的 B 和 T 细胞受体文库测序研究。
Front Immunol. 2018 Aug 16;9:1877. doi: 10.3389/fimmu.2018.01877. eCollection 2018.
7
Guidelines for reproducible analysis of adaptive immune receptor repertoire sequencing data.适应性免疫受体测序数据分析可重复性分析指南。
Brief Bioinform. 2024 Mar 27;25(3). doi: 10.1093/bib/bbae221.
8
nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.nf-core/airrflow:采用 Immcantation 框架的适应性免疫受体库分析工作流程。
PLoS Comput Biol. 2024 Jul 26;20(7):e1012265. doi: 10.1371/journal.pcbi.1012265. eCollection 2024 Jul.
9
Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires.计算策略解析适应性免疫受体的高维复杂性。
Front Immunol. 2018 Feb 21;9:224. doi: 10.3389/fimmu.2018.00224. eCollection 2018.
10
OGRDB: a reference database of inferred immune receptor genes.OGRDB:一个推断的免疫受体基因参考数据库。
Nucleic Acids Res. 2020 Jan 8;48(D1):D964-D970. doi: 10.1093/nar/gkz822.

引用本文的文献

1
The BCR-SEQC initiative.BCR-SEQC计划。
Nat Immunol. 2025 Jul;26(7):978-979. doi: 10.1038/s41590-025-02196-6.
2
Comprehensive Analysis of TCR and BCR Repertoires: Insights into Methodologies, Challenges, and Applications.TCR和BCR库的综合分析:对方法、挑战及应用的见解
Genomics Inform. 2025 Feb 24;23(1):6. doi: 10.1186/s44342-024-00034-z.
3
B cell tolerance and autoimmunity: Lessons from repertoires.B 细胞耐受与自身免疫:从库中得到的启示。

本文引用的文献

1
The Future of Blood Testing Is the Immunome.免疫组学:血液检测的未来。
Front Immunol. 2021 Mar 15;12:626793. doi: 10.3389/fimmu.2021.626793. eCollection 2021.
2
TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors.TCRMatch:基于与已鉴定受体的序列相似性预测 T 细胞受体特异性。
Front Immunol. 2021 Mar 11;12:640725. doi: 10.3389/fimmu.2021.640725. eCollection 2021.
3
Predicting recognition between T cell receptors and epitopes with TCRGP.使用 TCRGP 预测 T 细胞受体与表位之间的识别
J Exp Med. 2024 Sep 2;221(9). doi: 10.1084/jem.20231314. Epub 2024 Aug 2.
4
Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profiling.对人类 B 细胞受体基因组和抗体蛋白质组进行基准测试和整合。
NPJ Syst Biol Appl. 2024 Jul 12;10(1):73. doi: 10.1038/s41540-024-00402-z.
5
T-cell immunity induced and reshaped by an anti-HPV immuno-oncotherapeutic lentiviral vector.一种抗人乳头瘤病毒免疫肿瘤治疗性慢病毒载体诱导并重塑的T细胞免疫。
NPJ Vaccines. 2024 Jun 10;9(1):102. doi: 10.1038/s41541-024-00894-0.
6
Enhancing comparative T cell receptor repertoire analysis in small biological samples through pooling homologous cell samples from multiple mice.通过合并来自多只小鼠的同源细胞样本,增强小生物样本中的比较性T细胞受体库分析。
Cell Rep Methods. 2024 Apr 22;4(4):100753. doi: 10.1016/j.crmeth.2024.100753. Epub 2024 Apr 12.
7
Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes.类风湿关节炎中的七链适应性免疫受体库分析揭示了与疾病及临床相关表型相关的新特征。
Genome Biol. 2024 Mar 11;25(1):68. doi: 10.1186/s13059-024-03210-0.
8
B-Cell Receptor Repertoire: Recent Advances in Autoimmune Diseases.B 细胞受体库:自身免疫性疾病的最新进展。
Clin Rev Allergy Immunol. 2024 Feb;66(1):76-98. doi: 10.1007/s12016-024-08984-6. Epub 2024 Mar 9.
9
IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.IGHV 等位基因相似聚类可提高适应性免疫受体谱系测序数据的基因型推断。
Nucleic Acids Res. 2023 Sep 8;51(16):e86. doi: 10.1093/nar/gkad603.
10
DagSim: Combining DAG-based model structure with unconstrained data types and relations for flexible, transparent, and modularized data simulation.DagSim:将基于 DAG 的模型结构与不受约束的数据类型和关系相结合,以实现灵活、透明和模块化的数据模拟。
PLoS One. 2023 Apr 14;18(4):e0284443. doi: 10.1371/journal.pone.0284443. eCollection 2023.
PLoS Comput Biol. 2021 Mar 25;17(3):e1008814. doi: 10.1371/journal.pcbi.1008814. eCollection 2021 Mar.
4
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding.一套简洁的互补位-表位相互作用词汇表能够实现抗体-抗原结合的可预测性。
Cell Rep. 2021 Mar 16;34(11):108856. doi: 10.1016/j.celrep.2021.108856.
5
DeepTCR is a deep learning framework for revealing sequence concepts within T-cell repertoires.DeepTCR 是一个深度学习框架,用于揭示 T 细胞受体库中的序列概念。
Nat Commun. 2021 Mar 11;12(1):1605. doi: 10.1038/s41467-021-21879-w.
6
Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery.在人类非小细胞肺癌中进行共享 T 细胞特异性的全局分析,可实现 HLA 推断和抗原发现。
Immunity. 2021 Mar 9;54(3):586-602.e8. doi: 10.1016/j.immuni.2021.02.014.
7
Phage Display Technique as a Tool for Diagnosis and Antibody Selection for Coronaviruses.噬菌体展示技术作为冠状病毒诊断和抗体筛选的工具
Curr Microbiol. 2021 Apr;78(4):1124-1134. doi: 10.1007/s00284-021-02398-9. Epub 2021 Mar 9.
8
A computational method for immune repertoire mining that identifies novel binders from different clonotypes, demonstrated by identifying anti-pertussis toxoid antibodies.一种用于免疫受体库挖掘的计算方法,可从不同的克隆型中识别新的结合物,通过鉴定抗百日咳类毒素抗体得到了验证。
MAbs. 2021 Jan-Dec;13(1):1869406. doi: 10.1080/19420862.2020.1869406.
9
A new clustering method identifies multiple sclerosis-specific T-cell receptors.一种新的聚类方法可鉴定多发性硬化症特异性 T 细胞受体。
Ann Clin Transl Neurol. 2021 Jan;8(1):163-176. doi: 10.1002/acn3.51264. Epub 2021 Jan 5.
10
SARS-CoV-2 Epitopes Are Recognized by a Public and Diverse Repertoire of Human T Cell Receptors.SARS-CoV-2 表位被广泛的人类 T 细胞受体识别。
Immunity. 2020 Dec 15;53(6):1245-1257.e5. doi: 10.1016/j.immuni.2020.11.004. Epub 2020 Nov 13.