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血栓形成的定量系统药理学建模综述。

Review of quantitative systems pharmacological modeling in thrombosis.

作者信息

Cheng Limei, Wei Guo-Wei, Leil Tarek

机构信息

Clinical Pharmacology and Pharmacometrics Bristol-Myers Squibb, Princeton, NJ 08540, USA.

Department of Mathematics Michigan State University East Lansing, MI 48824 USA.

出版信息

Commun Inf Syst. 2019;19(3):219-240. doi: 10.4310/cis.2019.v19.n3.a1. Epub 2019 Dec 6.

DOI:10.4310/cis.2019.v19.n3.a1
PMID:34045928
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8153064/
Abstract

Hemostasis and thrombosis are often thought as two sides of the same clotting mechanism whereas hemostasis is a natural protective mechanism to prevent bleeding and thrombosis is a blood clot abnormally formulated inside a blood vessel, blocking the normal blood flow. The evidence to date suggests that at least arterial thrombosis results from the same critical pathways of hemostasis. Analysis of these complex processes and pathways using quantitative systems pharmacological model-based approach can facilitate the delineation of the causal pathways that lead to the emergence of thrombosis. In this paper, we provide an overview of the main molecular and physiological mechanisms associated with hemostasis and thrombosis, and review the models and quantitative system pharmacological modeling approaches that are relevant in characterizing the interplay among the multiple factors and pathways of thrombosis. An emphasis is given to computational models for drug development. Future trends are discussed.

摘要

止血和血栓形成通常被认为是同一凝血机制的两个方面,然而止血是一种防止出血的自然保护机制,而血栓形成是血管内异常形成的血凝块,阻碍正常血流。迄今为止的证据表明,至少动脉血栓形成源于相同的关键止血途径。使用基于定量系统药理学模型的方法分析这些复杂的过程和途径,有助于描绘导致血栓形成的因果途径。在本文中,我们概述了与止血和血栓形成相关的主要分子和生理机制,并回顾了在表征血栓形成的多种因素和途径之间相互作用方面相关的模型和定量系统药理学建模方法。重点介绍了用于药物开发的计算模型。还讨论了未来的趋势。

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本文引用的文献

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A mathematical model of coagulation under flow identifies factor V as a modifier of thrombin generation in hemophilia A.血流状态下凝血的数学模型确定因子V为甲型血友病中凝血酶生成的修饰因子。
J Thromb Haemost. 2020 Feb;18(2):306-317. doi: 10.1111/jth.14653. Epub 2019 Nov 1.
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Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges.用于 D3R 大挑战中的构象和结合亲和力预测和排序的数学深度学习。
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A local and global sensitivity analysis of a mathematical model of coagulation and platelet deposition under flow.在流动条件下凝血和血小板沉积的数学模型的局部和全局敏感性分析。
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Modeling thrombosis in silico: Frontiers, challenges, unresolved problems and milestones.计算机模拟血栓形成:前沿、挑战、未解决的问题和里程碑。
Phys Life Rev. 2018 Nov;26-27:57-95. doi: 10.1016/j.plrev.2018.02.005. Epub 2018 Mar 5.
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First-in-human study to assess the safety, pharmacokinetics and pharmacodynamics of BMS-962212, a direct, reversible, small molecule factor XIa inhibitor in non-Japanese and Japanese healthy subjects.一项在非日本和日本健康受试者中评估 BMS-962212(一种直接、可逆的小分子因子 XIa 抑制剂)的安全性、药代动力学和药效学的首次人体研究。
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Integration of element specific persistent homology and machine learning for protein-ligand binding affinity prediction.用于蛋白质-配体结合亲和力预测的元素特异性持久同调与机器学习的整合
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Multiscale simulation of thrombus growth and vessel occlusion triggered by collagen/tissue factor using a data-driven model of combinatorial platelet signalling.使用组合血小板信号的数据驱动模型对由胶原蛋白/组织因子触发的血栓生长和血管阻塞进行多尺度模拟。
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