Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02129, USA.
Department of Computer, Control, and Management Engineering, Sapienza University of Rome, 00185 Roma, Italy.
Sensors (Basel). 2021 May 23;21(11):3632. doi: 10.3390/s21113632.
EEG signals are widely used to estimate brain circuits associated with specific tasks and cognitive processes. The testing of connectivity estimators is still an open issue because of the lack of a ground-truth in real data. Existing solutions such as the generation of simulated data based on a manually imposed connectivity pattern or mass oscillators can model only a few real cases with limited number of signals and spectral properties that do not reflect those of real brain activity. Furthermore, the generation of time series reproducing non-ideal and non-stationary ground-truth models is still missing. In this work, we present the SEED-G toolbox for the generation of pseudo-EEG data with imposed connectivity patterns, overcoming the existing limitations and enabling control of several parameters for data simulation according to the user's needs. We first described the toolbox including guidelines for its correct use and then we tested its performances showing how, in a wide range of conditions, datasets composed by up to 60 time series were successfully generated in less than 5 s and with spectral features similar to real data. Then, SEED-G is employed for studying the effect of inter-trial variability Partial Directed Coherence (PDC) estimates, confirming its robustness.
脑电信号被广泛用于估计与特定任务和认知过程相关的大脑回路。由于缺乏真实数据中的基准,因此连接估计器的测试仍然是一个悬而未决的问题。现有的解决方案,如基于手动施加的连接模式或质量振荡器生成的模拟数据,只能对少数几个具有有限信号数量和频谱特性的真实案例进行建模,这些特性无法反映真实脑活动的特性。此外,仍然缺少生成再现非理想和非平稳基准模型的时间序列。在这项工作中,我们提出了 SEED-G 工具箱,用于生成具有强制连接模式的伪 EEG 数据,克服了现有局限性,并根据用户的需求控制数据模拟的几个参数。我们首先描述了该工具箱,包括正确使用的指南,然后测试了它的性能,结果表明,在广泛的条件下,多达 60 个时间序列的数据集可以在不到 5 秒的时间内成功生成,并且其频谱特征与真实数据相似。然后,SEED-G 被用于研究试验间变异性偏部分相干估计的影响,证实了其稳健性。