猪粪便和用粪肥施肥的农田中抗菌药物和金属耐药基因的共存。
Co-occurrence of antimicrobial and metal resistance genes in pig feces and agricultural fields fertilized with slurry.
机构信息
Department of Environment and Health, Jiangsu Center for Disease Control and Prevention, Nanjing 210009, China; Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, 1870 Frederiksberg C, Denmark.
Department of Environment and Health, Jiangsu Center for Disease Control and Prevention, Nanjing 210009, China.
出版信息
Sci Total Environ. 2021 Oct 20;792:148259. doi: 10.1016/j.scitotenv.2021.148259. Epub 2021 Jun 17.
Antimicrobial resistance constitutes a global challenge to public health. The common addition of Zn, Cu and other metals to animal feed and the widespread presence of metal ions in livestock and their receiving environments may be a factor that facilitates the proliferation of antimicrobial resistance via co-selection of antimicrobial resistance genes (ARGs) and metal resistance genes (MRGs). However, the extent of co-selection is not yet fully understood. In this study, we used a metagenomic approach to profile ARGs, MRGs and mobile genetic elements (MGEs) known to constitute potential ARG and MRG vectors of transmission, and we determined the concentration of metal ions to assess the interrelationships between the occurrence of ARGs, MRGs and metal concentrations in samples from pig farms in China. Samples analyzed included fresh pig feces, soils fertilized with treated slurry, and sediments from aquatic environments, where effluent from treated slurry was discharged. Resistance genes to tetracycline and zinc were the most commonly observed ARGs and MRGs for all three types of samples. Significant correlations were observed between the abundance of ARGs and MRGs, and between ARGs/MRGs and MGEs, and between metal and ARGs/MGEs as documented by Pearson's correlation analysis (r > 0.9, P < 0.001). Further network analysis revealed significant co-occurrence between specific ARGs and MRGs, between ARGs/MRGs and MGEs, and between specific metals (Zn, Cr, and Mn) and ARGs and MGEs. Collectively, our findings demonstrate a high level of co-occurrence of antimicrobial and metal resistance genes in slurry from pig farms and their surrounding environments. The results suggest that metals added to pig feed might facilitate co-selection of ARGs and MGEs in the pig production environments, thereby resulting in a bigger pool of mobile ARGs.
抗微生物药物耐药性对公共卫生构成全球性挑战。在动物饲料中普遍添加 Zn、Cu 和其他金属,以及在牲畜及其接收环境中广泛存在金属离子,可能是通过共选择抗微生物药物耐药基因 (ARGs) 和金属耐药基因 (MRGs) 促进抗微生物药物耐药性扩散的一个因素。然而,共选择的程度尚不完全清楚。在这项研究中,我们使用宏基因组学方法来分析已知构成抗微生物药物耐药基因和金属耐药基因传播潜在载体的 ARGs、MRGs 和可移动遗传元件 (MGEs),并测定金属离子浓度,以评估中国养猪场样本中 ARGs、MRGs 和金属浓度之间的相互关系。分析的样本包括新鲜猪粪便、经处理的粪浆施肥的土壤以及水生环境中的沉积物,其中经处理的粪浆的废水被排放到这些环境中。所有三种类型的样本中,对四环素和锌的耐药基因是最常见的 ARGs 和 MRGs。通过 Pearson 相关性分析 (r > 0.9,P < 0.001) 发现,ARGs 和 MRGs 之间、ARGs/MRGs 与 MGEs 之间、金属与 ARGs/MGEs 之间的丰度存在显著相关性。进一步的网络分析显示,特定的 ARGs 和 MRGs 之间、ARGs/MRGs 与 MGEs 之间以及特定金属 (Zn、Cr 和 Mn) 与 ARGs 和 MGEs 之间存在显著的共同发生。总之,我们的研究结果表明,养猪场粪浆及其周围环境中存在高水平的抗微生物药物和金属耐药基因的共同发生。研究结果表明,添加到猪饲料中的金属可能会促进猪生产环境中 ARGs 和 MGEs 的共选择,从而导致更多可移动的 ARGs 池。