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在韩国分离出的菊科植物Herbich的完整叶绿体基因组。

The complete chloroplast genome of Herbich (Asteraceae) isolated in Korea.

作者信息

Baek Jinwook, Park Suhyeon, Lee Junho, Min Juhyeon, Park Jongsun, Lee Gun Woong

机构信息

Jeonju AgroBio-Materials Institute, Jeonju-si, Republic of Korea.

InfoBoss Inc., Seoul, Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2021 Jun 14;6(7):1956-1958. doi: 10.1080/23802359.2021.1934148.

Abstract

We have determined the complete chloroplast genome of Herbich isolated in Korea. The circular chloroplast genome of is 151,137 bp long and has four subregions: 83,041 bp of large single copy and 18,350 bp of small single copy regions are separated by 24,873 bp of inverted repeat regions including 133 genes (87 protein-coding genes, eight rRNA genes, 37 tRNAs, and one pseudogene). There are 65 to 152 single nucleotide polymorphisms and 33 to 64 insertion and deletion regions (178 bp to 372 bp in length) identified against three available chloroplast genomes of . The phylogenetic tree shows that is clustered as a paraphyletic group with subsp. , displaying incongruency between species and clades.

摘要

我们已经确定了在韩国分离出的Herbich的完整叶绿体基因组。其环状叶绿体基因组长度为151,137 bp,有四个亚区域:83,041 bp的大单拷贝区域和18,350 bp的小单拷贝区域被24,873 bp的反向重复区域隔开,该反向重复区域包含133个基因(87个蛋白质编码基因、8个rRNA基因、37个tRNA基因和1个假基因)。与三个可用的Herbich叶绿体基因组相比,发现有65至152个单核苷酸多态性以及33至64个插入和缺失区域(长度为178 bp至372 bp)。系统发育树显示,Herbich与subsp. 聚为一个并系群,表明物种与分支之间存在不一致性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e25/8205035/3bba1cfa17c8/TMDN_A_1934148_F0001_B.jpg

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