Suppr超能文献

全球分布的OM252浮游细菌的生态生理学()

Ecophysiology of the Cosmopolitan OM252 Bacterioplankton ().

作者信息

Savoie Emily R, Lanclos V Celeste, Henson Michael W, Cheng Chuankai, Getz Eric W, Barnes Shelby J, LaRowe Douglas E, Rappé Michael S, Thrash J Cameron

机构信息

Department of Oceanography and Coastal Sciences, Louisiana State Universitygrid.64337.35, Baton Rouge, Louisiana, USA.

Department of Biological Sciences, grid.42505.36University of Southern California, Los Angeles, California, USA.

出版信息

mSystems. 2021 Jun 29;6(3):e0027621. doi: 10.1128/mSystems.00276-21.

Abstract

Among the thousands of species that comprise marine bacterioplankton communities, most remain functionally obscure. One key cosmopolitan group in this understudied majority is the OM252 clade of . Although frequently found in sequence data and even previously cultured, the diversity, metabolic potential, physiology, and distribution of this clade has not been thoroughly investigated. Here, we examined these features of OM252 bacterioplankton using a newly isolated strain and genomes from publicly available databases. We demonstrated that this group constitutes a globally distributed novel genus (" Halomarinus"), sister to , comprising two subclades and multiple distinct species. OM252 organisms have small genomes (median, 2.21 Mbp) and are predicted obligate aerobes capable of alternating between chemoorganoheterotrophic and chemolithotrophic growth using reduced sulfur compounds as electron donors. Subclade I genomes encode genes for the Calvin-Benson-Bassham cycle for carbon fixation. One representative strain of subclade I, LSUCC0096, had extensive halotolerance and a mesophilic temperature range for growth, with a maximum rate of 0.36 doublings/h at 35°C. Cells were curved rod/spirillum-shaped, ∼1.5 by 0.2 μm. Growth yield on thiosulfate as the sole electron donor under autotrophic conditions was roughly one-third that of heterotrophic growth, even though calculations indicated similar Gibbs energies for both catabolisms. These phenotypic data show that some " Halomarinus" organisms can switch between serving as carbon sources or sinks and indicate the likely anabolic cost of lithoautotrophic growth. Our results thus provide new hypotheses about the roles of these organisms in global biogeochemical cycling of carbon and sulfur. Marine microbial communities are teeming with understudied taxa due to the sheer numbers of species in any given sample of seawater. One group, the OM252 clade of , has been identified in gene surveys from myriad locations, and one isolated organism has even been genome sequenced (HIMB30). However, further study of these organisms has not occurred. Using another isolated representative (strain LSUCC0096) and publicly available genome sequences from metagenomic and single-cell genomic data sets, we examined the diversity within the OM252 clade and the distribution of these taxa in the world's oceans, reconstructed the predicted metabolism of the group, and quantified growth dynamics in LSUCC0096. Our results generate new knowledge about the previously enigmatic OM252 clade and point toward the importance of facultative chemolithoautotrophy for supporting some clades of ostensibly "heterotrophic" taxa.

摘要

在构成海洋浮游细菌群落的数千个物种中,大多数在功能上仍不为人知。在这一研究较少的大多数物种中,一个关键的世界性类群是 的OM252进化枝。尽管在序列数据中经常发现,甚至以前也进行过培养,但该进化枝的多样性、代谢潜力、生理学和分布尚未得到彻底研究。在这里,我们使用新分离的菌株和来自公开数据库的基因组,研究了OM252浮游细菌的这些特征。我们证明,这一类群构成了一个全球分布的新属(“盐海菌属”),是 的姐妹属,包括两个亚进化枝和多个不同的物种。OM252生物的基因组较小(中位数为2.21 Mbp),预计为专性需氧菌,能够以还原态硫化合物作为电子供体,在化学有机异养和化学无机营养生长之间交替。亚进化枝I的基因组编码用于卡尔文-本森-巴斯姆循环的碳固定基因。亚进化枝I的一个代表性菌株LSUCC0096具有广泛的耐盐性和中温生长温度范围,在35°C时的最大生长速率为每小时0.36代。细胞呈弯曲杆状/螺旋状,约1.5×0.2μm。在自养条件下,以硫代硫酸盐作为唯一电子供体的生长产量约为异养生长的三分之一,尽管计算表明两种分解代谢的吉布斯自由能相似。这些表型数据表明,一些“盐海菌属”生物可以在作为碳源或碳汇之间切换,并表明了 lithoautotrophic生长可能的合成代谢成本。因此,我们的结果为这些生物在全球碳和硫生物地球化学循环中的作用提供了新的假设。由于任何给定海水样本中的物种数量众多,海洋微生物群落中充满了研究不足的分类群。一个类群,即 的OM252进化枝,已在来自众多地点的基因调查中被鉴定出来,甚至有一个分离出的生物体已进行了基因组测序(HIMB30)。然而,对这些生物体的进一步研究尚未进行。我们使用另一个分离出的代表性菌株(LSUCC0096)以及来自宏基因组和单细胞基因组数据集的公开可用基因组序列,研究了OM252进化枝内的多样性以及这些分类群在世界海洋中的分布,重建了该类群的预测代谢,并量化了LSUCC0096中的生长动态。我们的结果产生了关于以前神秘的OM252进化枝的新知识,并指出了兼性化学无机自养对于支持一些表面上“异养”分类群的进化枝的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c98/8269220/a4d4884ba49f/msystems.00276-21-f001.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验