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基于 CT 和 MR 体模的放射组学特征在不同感兴趣区大小中的稳定性研究。

Stability of Radiomic Features across Different Region of Interest Sizes-A CT and MR Phantom Study.

机构信息

Department of Radiology, Corporate Member of Freie Universität and Humboldt-Universität zu Berlin, Charité-Universitätsmedizin Berlin, Hindenburgdamm 30, 12203 Berlin, Germany.

出版信息

Tomography. 2021 Jun 8;7(2):238-252. doi: 10.3390/tomography7020022.

Abstract

We aimed to evaluate radiomic features' stability across different region of interest (ROI) sizes in CT and MR images. We chose a phantom with a homogenous internal structure so no differences for a feature extracted from ROIs of different sizes would be expected. For this, we scanned a plastic cup filled with sodium chloride solution ten times in CT and per MR sequence (T1-weighted-gradient-echo and T2-weighted-turbo-inversion-recovery-magnitude). We placed sphere-shaped ROIs of different diameters (4, 8, and 16 mm, and 4, 8, and 16 pixels) into the phantom's center. Features were extracted using PyRadiomics. We assessed feature stability across ROI sizes with overall concordance correlation coefficients (OCCCs). Differences were tested for significance with the Mann-Whitney U-test. Of 93 features, 87 T1w-derived, 87 TIRM-derived, and 70 CT-derived features were significantly different between ROI sizes. Among MR-derived features, OCCCs showed excellent (>0.90) agreement for mean, median, and root mean squared for ROI sizes between 4 and 16 mm and pixels. We further observed excellent agreement for 10th and 90th percentile in T1w and 10th percentile in T2w TIRM images. There was no excellent agreement among the OCCCs of CT-derived features. In summary, many features indicated significant differences and only few showed excellent agreement across varying ROI sizes, although we examined a homogenous phantom. Since we considered a small phantom in an experimental setting, further studies to investigate this size effect would be necessary for a generalization. Nevertheless, we believe knowledge about this effect is crucial in interpreting radiomics studies, as features that supposedly discriminate disease entities may only indicate a systematic difference in ROI size.

摘要

我们旨在评估 CT 和 MR 图像中不同感兴趣区域 (ROI) 大小的放射组学特征的稳定性。我们选择了一个具有均匀内部结构的体模,因此不应期望从不同大小 ROI 中提取的特征存在差异。为此,我们在 CT 上扫描了一个装满氯化钠溶液的塑料杯十次,并在每次 MR 序列(T1 加权梯度回波和 T2 加权反转恢复幅度)上进行扫描。我们将不同直径的球形 ROI(4、8 和 16 毫米以及 4、8 和 16 像素)放置在体模的中心。使用 PyRadiomics 提取特征。我们使用整体一致性相关系数 (OCCC) 评估跨 ROI 大小的特征稳定性。使用 Mann-Whitney U 检验测试差异的显著性。在 93 个特征中,87 个 T1w 衍生特征、87 个 TIRM 衍生特征和 70 个 CT 衍生特征在 ROI 大小之间存在显著差异。在 MR 衍生特征中,OCCC 在 4 到 16 毫米和像素之间的 ROI 大小上显示出均值、中位数和均方根的极好 (>0.90) 一致性。我们还观察到 T1w 的第 10 百分位数和第 90 百分位数以及 T2w TIRM 图像的第 10 百分位数的极好一致性。CT 衍生特征的 OCCC 之间没有极好的一致性。总之,尽管我们检查了一个同质的体模,但许多特征表明存在显著差异,只有少数特征在不同的 ROI 大小之间表现出极好的一致性。由于我们在实验环境中考虑了一个小体模,因此需要进一步研究以调查这种尺寸效应,以便推广。尽管如此,我们认为了解这种效应对于解释放射组学研究至关重要,因为那些据称可以区分疾病实体的特征可能只表明 ROI 大小存在系统差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8caa/8293351/60c9e2389c24/tomography-07-00022-g001.jpg

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