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T7 DNA 外排小体周质隧道的 2.7Å 分辨率冷冻电镜结构。

Cryo-EM structure of the periplasmic tunnel of T7 DNA-ejectosome at 2.7 Å resolution.

机构信息

Department of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.

Zhejiang University-University of Edinburgh Institute, School of Medicine, Hangzhou, China.

出版信息

Mol Cell. 2021 Aug 5;81(15):3145-3159.e7. doi: 10.1016/j.molcel.2021.06.001. Epub 2021 Jul 1.

Abstract

Hershey and Chase used bacteriophage T2 genome delivery inside Escherichia coli to demonstrate that DNA, not protein, is the genetic material. Seventy years later, our understanding of viral genome delivery in prokaryotes remains limited, especially for short-tailed phages of the Podoviridae family. These viruses expel mysterious ejection proteins found inside the capsid to form a DNA-ejectosome for genome delivery into bacteria. Here, we reconstitute the phage T7 DNA-ejectosome components gp14, gp15, and gp16 and solve the periplasmic tunnel structure at 2.7 Å resolution. We find that gp14 forms an outer membrane pore, gp15 assembles into a 210 Å hexameric DNA tube spanning the host periplasm, and gp16 extends into the host cytoplasm forming a ∼4,200 residue hub. Gp16 promotes gp15 oligomerization, coordinating peptidoglycan hydrolysis, DNA binding, and lipid insertion. The reconstituted gp15:gp16 complex lacks channel-forming activity, suggesting that the pore for DNA passage forms only transiently during genome ejection.

摘要

赫希和蔡斯利用噬菌体 T2 基因组在大肠杆菌内的传递,证明了 DNA 而非蛋白质是遗传物质。70 年后,我们对原核生物中病毒基因组传递的理解仍然有限,特别是对于短尾噬菌体科的 Podoviridae 家族的噬菌体。这些病毒会排出衣壳内发现的神秘的喷出蛋白,形成 DNA 喷出体,以便将基因组递送至细菌内。在这里,我们重新组装了噬菌体 T7 的 DNA 喷出体组件 gp14、gp15 和 gp16,并以 2.7 Å 的分辨率解决了周质隧道结构。我们发现 gp14 形成了外膜孔,gp15 组装成一个 210 Å 的六聚体 DNA 管,跨越宿主周质,gp16 延伸到宿主细胞质中形成一个约 4200 个残基的中心。gp16 促进了 gp15 的寡聚化,协调肽聚糖水解、DNA 结合和脂质插入。重组的 gp15:gp16 复合物缺乏形成通道的活性,这表明在基因组喷出过程中,DNA 穿过的孔仅短暂形成。

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