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用于识别生物制剂治疗类风湿关节炎患者缓解预测中重要临床特征的机器学习模型。

Machine learning model for identifying important clinical features for predicting remission in patients with rheumatoid arthritis treated with biologics.

机构信息

Department of Internal Medicine, Inje University Seoul Paik Hospital, Inje University College of Medicine, Seoul, Korea.

Department of Management Engineering, College of Business, KAIST, Seoul, Korea.

出版信息

Arthritis Res Ther. 2021 Jul 6;23(1):178. doi: 10.1186/s13075-021-02567-y.

Abstract

BACKGROUND

We developed a model to predict remissions in patients treated with biologic disease-modifying anti-rheumatic drugs (bDMARDs) and to identify important clinical features associated with remission using explainable artificial intelligence (XAI).

METHODS

We gathered the follow-up data of 1204 patients treated with bDMARDs (etanercept, adalimumab, golimumab, infliximab, abatacept, and tocilizumab) from the Korean College of Rheumatology Biologics and Targeted Therapy Registry. Remission was predicted at 1-year follow-up using baseline clinical data obtained at the time of enrollment. Machine learning methods (e.g., lasso, ridge, support vector machine, random forest, and XGBoost) were used for the predictions. The Shapley additive explanation (SHAP) value was used for interpretability of the predictions.

RESULTS

The ranges for accuracy and area under the receiver operating characteristic of the newly developed machine learning model for predicting remission were 52.8-72.9% and 0.511-0.694, respectively. The Shapley plot in XAI showed that the impacts of the variables on predicting remission differed for each bDMARD. The most important features were age for adalimumab, rheumatoid factor for etanercept, erythrocyte sedimentation rate for infliximab and golimumab, disease duration for abatacept, and C-reactive protein for tocilizumab, with mean SHAP values of - 0.250, - 0.234, - 0.514, - 0.227, - 0.804, and 0.135, respectively.

CONCLUSIONS

Our proposed machine learning model successfully identified clinical features that were predictive of remission in each of the bDMARDs. This approach may be useful for improving treatment outcomes by identifying clinical information related to remissions in patients with rheumatoid arthritis.

摘要

背景

我们开发了一种模型,通过可解释的人工智能(XAI)来预测接受生物制剂治疗的患者的缓解情况,并确定与缓解相关的重要临床特征。

方法

我们从韩国风湿病学会生物制剂和靶向治疗登记处收集了 1204 名接受生物制剂(依那西普、阿达木单抗、戈利木单抗、英夫利昔单抗、阿巴西普和托珠单抗)治疗的患者的随访数据。使用入组时获得的基线临床数据预测 1 年随访时的缓解情况。使用机器学习方法(例如,lasso、ridge、支持向量机、随机森林和 XGBoost)进行预测。使用 Shapley 加法解释(SHAP)值对预测进行解释。

结果

新开发的机器学习模型预测缓解的准确性和接受者操作特征曲线下面积的范围分别为 52.8%-72.9%和 0.511-0.694。XAI 中的 Shapley 图显示,变量对预测缓解的影响因每种生物制剂而异。阿达木单抗最重要的特征是年龄,依那西普是类风湿因子,英夫利昔单抗和戈利木单抗是红细胞沉降率,阿巴西普是疾病持续时间,托珠单抗是 C 反应蛋白,平均 SHAP 值分别为-0.250、-0.234、-0.514、-0.227、-0.804 和 0.135。

结论

我们提出的机器学习模型成功地确定了预测每种生物制剂缓解的临床特征。这种方法可能有助于通过识别与类风湿关节炎患者缓解相关的临床信息来改善治疗结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5775/8259419/83a74e55fa3e/13075_2021_2567_Fig1_HTML.jpg

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