CloudReg: automatic terabyte-scale cross-modal brain volume registration.
作者信息
Chandrashekhar Vikram, Tward Daniel J, Crowley Devin, Crow Ailey K, Wright Matthew A, Hsueh Brian Y, Gore Felicity, Machado Timothy A, Branch Audrey, Rosenblum Jared S, Deisseroth Karl, Vogelstein Joshua T
机构信息
Center for Imaging Science, Johns Hopkins University, Baltimore, MD, USA.
Department of Computational Medicine and Neurology, University of California Los Angeles, Los Angeles, CA, USA.
出版信息
Nat Methods. 2021 Aug;18(8):845-846. doi: 10.1038/s41592-021-01218-z.
Abstract
摘要
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1
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2
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3
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4
A community-developed open-source computational ecosystem for big neuro data.
Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1.
5
Advanced CLARITY for rapid and high-resolution imaging of intact tissues.
Nat Protoc. 2014 Jul;9(7):1682-97. doi: 10.1038/nprot.2014.123. Epub 2014 Jun 19.
6
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7
Web tools for large-scale 3D biological images and atlases.
BMC Bioinformatics. 2012 Jun 7;13:122. doi: 10.1186/1471-2105-13-122.
8
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Radiographics. 2006 Jan-Feb;26(1):275-97. doi: 10.1148/rg.261055134.
9
Artifacts in CT: recognition and avoidance.
Radiographics. 2004 Nov-Dec;24(6):1679-91. doi: 10.1148/rg.246045065.
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