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本文引用的文献

1
Artificial intelligence approaches using natural language processing to advance EHR-based clinical research.利用自然语言处理技术的人工智能方法来推进基于电子健康记录的临床研究。
J Allergy Clin Immunol. 2020 Feb;145(2):463-469. doi: 10.1016/j.jaci.2019.12.897. Epub 2019 Dec 26.
2
Using distant supervision to augment manually annotated data for relation extraction.利用远程监督来扩充人工标注数据以进行关系抽取。
PLoS One. 2019 Jul 30;14(7):e0216913. doi: 10.1371/journal.pone.0216913. eCollection 2019.
3
A clinical text classification paradigm using weak supervision and deep representation.一种使用弱监督和深度表示的临床文本分类范式。
BMC Med Inform Decis Mak. 2019 Jan 7;19(1):1. doi: 10.1186/s12911-018-0723-6.
4
Automated chart review utilizing natural language processing algorithm for asthma predictive index.利用自然语言处理算法进行自动化图表审查,以预测哮喘指数。
BMC Pulm Med. 2018 Feb 13;18(1):34. doi: 10.1186/s12890-018-0593-9.
5
Ascertainment of asthma prognosis using natural language processing from electronic medical records.利用电子病历中的自然语言处理技术确定哮喘预后。
J Allergy Clin Immunol. 2018 Jun;141(6):2292-2294.e3. doi: 10.1016/j.jaci.2017.12.1003. Epub 2018 Feb 10.
6
Clinical documentation variations and NLP system portability: a case study in asthma birth cohorts across institutions.临床文档差异与自然语言处理系统的可移植性:跨机构哮喘出生队列的案例研究
J Am Med Inform Assoc. 2018 Mar 1;25(3):353-359. doi: 10.1093/jamia/ocx138.
7
Natural Language Processing for Asthma Ascertainment in Different Practice Settings.不同实践环境下的哮喘确定的自然语言处理。
J Allergy Clin Immunol Pract. 2018 Jan-Feb;6(1):126-131. doi: 10.1016/j.jaip.2017.04.041. Epub 2017 Jun 19.
8
Application of a Natural Language Processing Algorithm to Asthma Ascertainment. An Automated Chart Review.一种自然语言处理算法在哮喘确诊中的应用。自动病历审查。
Am J Respir Crit Care Med. 2017 Aug 15;196(4):430-437. doi: 10.1164/rccm.201610-2006OC.
9
Adherence to Asthma Guidelines in Children, Tweens, and Adults in Primary Care Settings: A Practice-Based Network Assessment.基层医疗环境中儿童、青少年和成人对哮喘指南的依从性:基于实践网络的评估
Mayo Clin Proc. 2016 Apr;91(4):411-21. doi: 10.1016/j.mayocp.2016.01.010. Epub 2016 Mar 1.
10
Summary health statistics for u.s. Adults: national health interview survey, 2004.美国成年人健康统计摘要:2004年国民健康访谈调查
Vital Health Stat 10. 2006 May(228):1-164.

通过深度学习从临床记录中识别哮喘吸入器使用技术

Deep Learning Identification of Asthma Inhaler Techniques in Clinical Notes.

作者信息

Kshatriya Bhavani Singh Agnikula, Sagheb Elham, Wi Chung-Il, Yoon Jungwon, Seol Hee Yun, Juhn Young, Sohn Sunghwan

机构信息

Division of Digital Health Sciences, Mayo Clinic, Rochester MN, USA.

Community Pediatrics and Adolescent Medicine, Mayo Clinic, Rochester MN, USA.

出版信息

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2020;2020. doi: 10.1109/bibm49941.2020.9313224. Epub 2021 Jan 13.

DOI:10.1109/bibm49941.2020.9313224
PMID:34336372
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8323494/
Abstract

There are significant variabilities in clinicians' guideline-concordant documentation in asthma care. However, assessing clinicians' documentation is not feasible using only structured data but requires labor intensive chart review of electronic health records. Although the national asthma guidelines are available it is still challenging to use them as a real-time tool for providing feedback on adhering documentation guidelines for asthma care improvement. A certain guideline element, such as teaching or reviewing inhaler techniques, is difficult to capture by handcrafted rules since it requires contextual understanding of clinical narratives. This study examined a deep learning based natural language model, Bidirectional Encoder Representations from Transformers (BERT) coupled with distant supervision to identify inhaler techniques from clinical narratives. The BERT model with distant supervision outperformed the rule-based approach and achieved performance gain compared with the BERT without distant supervision.

摘要

临床医生在哮喘护理中遵循指南的记录存在显著差异。然而,仅使用结构化数据来评估临床医生的记录是不可行的,而是需要对电子健康记录进行劳动强度大的图表审查。尽管有国家哮喘指南,但将其用作实时工具以提供关于遵循哮喘护理记录指南以改善护理的反馈仍然具有挑战性。某些指南要素,如教授或复习吸入器技术,很难通过手工制定的规则来捕捉,因为这需要对临床叙述有上下文理解。本研究考察了一种基于深度学习的自然语言模型,即来自变换器的双向编码器表示(BERT),并结合远程监督从临床叙述中识别吸入器技术。带有远程监督的BERT模型优于基于规则的方法,并且与没有远程监督的BERT相比性能有所提高。