Kshatriya Bhavani Singh Agnikula, Sagheb Elham, Wi Chung-Il, Yoon Jungwon, Seol Hee Yun, Juhn Young, Sohn Sunghwan
Division of Digital Health Sciences, Mayo Clinic, Rochester MN, USA.
Community Pediatrics and Adolescent Medicine, Mayo Clinic, Rochester MN, USA.
Proceedings (IEEE Int Conf Bioinformatics Biomed). 2020;2020. doi: 10.1109/bibm49941.2020.9313224. Epub 2021 Jan 13.
There are significant variabilities in clinicians' guideline-concordant documentation in asthma care. However, assessing clinicians' documentation is not feasible using only structured data but requires labor intensive chart review of electronic health records. Although the national asthma guidelines are available it is still challenging to use them as a real-time tool for providing feedback on adhering documentation guidelines for asthma care improvement. A certain guideline element, such as teaching or reviewing inhaler techniques, is difficult to capture by handcrafted rules since it requires contextual understanding of clinical narratives. This study examined a deep learning based natural language model, Bidirectional Encoder Representations from Transformers (BERT) coupled with distant supervision to identify inhaler techniques from clinical narratives. The BERT model with distant supervision outperformed the rule-based approach and achieved performance gain compared with the BERT without distant supervision.
临床医生在哮喘护理中遵循指南的记录存在显著差异。然而,仅使用结构化数据来评估临床医生的记录是不可行的,而是需要对电子健康记录进行劳动强度大的图表审查。尽管有国家哮喘指南,但将其用作实时工具以提供关于遵循哮喘护理记录指南以改善护理的反馈仍然具有挑战性。某些指南要素,如教授或复习吸入器技术,很难通过手工制定的规则来捕捉,因为这需要对临床叙述有上下文理解。本研究考察了一种基于深度学习的自然语言模型,即来自变换器的双向编码器表示(BERT),并结合远程监督从临床叙述中识别吸入器技术。带有远程监督的BERT模型优于基于规则的方法,并且与没有远程监督的BERT相比性能有所提高。