• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

桑科(Moraceae)植物的完整叶绿体基因组及系统发育关系。

The complete chloroplast genome of (Moraceae) and phylogenetic relationships.

作者信息

de Souza Ueric José Borges, Dos Santos Raíssa Nunes, de Araújo Filho Renisson Neponuceno, Dos Santos Gil Rodrigues, Almeida Sarmento Renato, De Bellis Fabien, Campos Fabrício Souza

机构信息

Laboratory of Bioinformatics & Biotechnology, Federal University of Tocantins, Gurupi, Brazil.

Department of Forestry Engineering, Federal University of Tocantins, Gurupi, Brazil.

出版信息

Mitochondrial DNA B Resour. 2021 Jul 14;6(8):2291-2293. doi: 10.1080/23802359.2021.1945504. eCollection 2021.

DOI:10.1080/23802359.2021.1945504
PMID:34345682
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8284141/
Abstract

The chloroplast (cp) is an essential organelle in higher plants. The genes of the plastome are well suited to infer phylogenetic relationships among taxa. In this study, we report the assembly of the cp genome of and its phylogeny among species from Moraceae family. The cp genome of was 160,822 base pair (bp) in length, comprising one large single-copy region of 88,692 bp, one small single-copy region of 19,290 bp, and a pair of inverted repeat regions (IRs) of 26,420 bp. A total of 113 different genes were predicted, including 79 protein-coding genes, 30 RNA genes, and four RNA genes. The phylogenetic analysis of 19 species belonging to the Moraceae family confirmed the phylogenetic proximity of the genus and and the genetic similarity of and .

摘要

叶绿体(cp)是高等植物中一种重要的细胞器。质体基因组的基因非常适合推断分类群之间的系统发育关系。在本研究中,我们报告了[具体物种]叶绿体基因组的组装及其在桑科物种中的系统发育。[具体物种]的叶绿体基因组长度为160,822碱基对(bp),包括一个88,692 bp的大单拷贝区域、一个19,290 bp的小单拷贝区域和一对26,420 bp的反向重复区域(IR)。总共预测了113个不同的基因,包括79个蛋白质编码基因、30个RNA基因和4个rRNA基因。对桑科19个物种的系统发育分析证实了[具体属1]属和[具体属2]属在系统发育上的亲缘关系以及[具体物种1]和[具体物种2]的遗传相似性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cedf/8284141/ab51e2dbe8b5/TMDN_A_1945504_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cedf/8284141/ab51e2dbe8b5/TMDN_A_1945504_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cedf/8284141/ab51e2dbe8b5/TMDN_A_1945504_F0001_C.jpg

相似文献

1
The complete chloroplast genome of (Moraceae) and phylogenetic relationships.桑科(Moraceae)植物的完整叶绿体基因组及系统发育关系。
Mitochondrial DNA B Resour. 2021 Jul 14;6(8):2291-2293. doi: 10.1080/23802359.2021.1945504. eCollection 2021.
2
The complete plastome sequence of (Parkinson ex F.A. Zorn) Fosberg, (Moraceae).(帕金森氏,以F.A.佐恩的名字命名)福斯伯格(桑科)的完整质体基因组序列。
Mitochondrial DNA B Resour. 2023 Jan 16;8(1):154-156. doi: 10.1080/23802359.2022.2163595. eCollection 2023.
3
The complete chloroplast genome sequence of ..的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2020 Jan 27;5(1):910-911. doi: 10.1080/23802359.2020.1715293.
4
The plastid genome of a narrowly distributed species (Moraceae).一个狭域分布物种(桑科)的质体基因组。
Mitochondrial DNA B Resour. 2021 Feb 11;6(2):454-455. doi: 10.1080/23802359.2020.1871434.
5
The complete chloroplast genome and phylogenetic analysis of ..的完整叶绿体基因组及系统发育分析
Mitochondrial DNA B Resour. 2021 Oct 7;6(11):3148-3150. doi: 10.1080/23802359.2021.1987165. eCollection 2021.
6
Complete chloroplast genome of Stephania tetrandra (Menispermaceae) from Zhejiang Province: insights into molecular structures, comparative genome analysis, mutational hotspots and phylogenetic relationships.浙江省头花千金藤(防己科)完整叶绿体基因组:分子结构、比较基因组分析、突变热点和系统发育关系的见解。
BMC Genomics. 2021 Dec 6;22(1):880. doi: 10.1186/s12864-021-08193-x.
7
The complete chloroplast genome sequence of (Moraceae) from Xishuangbanna, China.来自中国西双版纳的桑科(Moraceae)[具体物种未给出]的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2021 Sep 9;6(10):2890-2892. doi: 10.1080/23802359.2021.1973603. eCollection 2021.
8
Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery.为开发系统发育标记和进行基因发现而对面包树(桑科)进行的低覆盖度全基因组测序。
Appl Plant Sci. 2016 Jul 13;4(7). doi: 10.3732/apps.1600017. eCollection 2016 Jul.
9
Chloroplast microsatellite markers for Artocarpus (Moraceae) developed from transcriptome sequences.基于转录组序列开发的桑科波罗蜜属叶绿体微卫星标记。
Appl Plant Sci. 2015 Sep 10;3(9). doi: 10.3732/apps.1500049. eCollection 2015 Sep.
10
Complete chloroplast genome of Ficus racemosa (Moraceae).聚果榕(桑科)的完整叶绿体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4655-4656. doi: 10.3109/19401736.2015.1106488. Epub 2015 Dec 28.

本文引用的文献

1
The complete chloroplast genome of (Moraceae).桑科(Moraceae)植物的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2017 Dec 12;3(1):13-14. doi: 10.1080/23802359.2017.1413317.
2
Characterization and phylogenetic significance of the complete chloroplast genome of , an economic crop for producing oil.一种产油经济作物的叶绿体全基因组特征及系统发育意义
Mitochondrial DNA B Resour. 2020 Jan 7;5(1):362-363. doi: 10.1080/23802359.2019.1703569.
3
Comparative Plastomics of Ashwagandha (, Solanaceae) and Identification of Mutational Hotspots for Barcoding Medicinal Plants.
印度人参(茄科)的比较质体基因组学及药用植物条形码突变热点的鉴定
Plants (Basel). 2020 Jun 15;9(6):752. doi: 10.3390/plants9060752.
4
The complete chloroplast genome of Stryphnodendron adstringens (Leguminosae - Caesalpinioideae): comparative analysis with related Mimosoid species.鼓槌树(豆科-苏木亚科)完整叶绿体基因组:与相关含羞草族物种的比较分析。
Sci Rep. 2019 Oct 2;9(1):14206. doi: 10.1038/s41598-019-50620-3.
5
Organellar genome assembly methods and comparative analysis of horticultural plants.园艺植物细胞器基因组组装方法及比较分析
Hortic Res. 2018 Jan 10;5:3. doi: 10.1038/s41438-017-0002-1. eCollection 2018.
6
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
7
Out of Borneo: biogeography, phylogeny and divergence date estimates of Artocarpus (Moraceae).走出婆罗洲:波罗蜜属(桑科)的生物地理学、系统发育及分歧时间估计
Ann Bot. 2017 Mar 1;119(4):611-627. doi: 10.1093/aob/mcw249.
8
New development and validation of 50 SSR markers in breadfruit (Artocarpus altilis, Moraceae) by next-generation sequencing.通过下一代测序技术开发并验证面包果(桑科波罗蜜属阿尔蒂面包果)中的50个简单序列重复(SSR)标记
Appl Plant Sci. 2016 Jul 29;4(8). doi: 10.3732/apps.1600021. eCollection 2016 Aug.
9
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
10
Complex origins of breadfruit (Artocarpus altilis, Moraceae): implications for human migrations in Oceania.面包果(Moraceae 榕属 Artocarpus altilis)的复杂起源:对大洋洲人类迁徙的启示。
Am J Bot. 2004 May;91(5):760-6. doi: 10.3732/ajb.91.5.760.