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秘鲁皮肤溃疡患者利什曼原虫属和并发真菌及分枝杆菌的即时分子检测设备的评估。

Evaluation of a point-of-care molecular detection device for Leishmania spp. and intercurrent fungal and mycobacterial organisms in Peruvian patients with cutaneous ulcers.

机构信息

Institute of Medical Science, University of Toronto, Toronto, ON, Canada.

Instituto de Medicina Tropical "Alexander Von Humboldt", Lima, Peru.

出版信息

Infection. 2021 Dec;49(6):1203-1211. doi: 10.1007/s15010-021-01673-y. Epub 2021 Aug 8.

Abstract

PURPOSE

Overlapping clinical features of cutaneous leishmaniasis (CL) with ulcers caused by fungi and mycobacteria necessitate confirmatory diagnostic testing. We evaluated a handheld battery-operated device for detection of CL and common fungal and mycobacterial causes of ulcers.

METHODS

We validated Palm PCR™ for detection of common ulcerative skin pathogens using ATCC reference and clinical strains of Leishmania, mycobacteria, and fungi in the lab and field. Amplified products were Sanger sequenced. Performance characteristics were calculated using conventional PCR as a reference standard.

RESULTS

Palm PCR™ detected 100% of ATCC strains of Leishmania, fungi, and mycobacteria, with sensitivity and specificity of 90% and 91.7%, respectively. In the field, the sensitivity for detection of Leishmania in patients with suspected CL was 100%. In 61% of CL patients, co-colonization with genera such as Malassezia, Aspergillus, Candida, and Cladosporium was detected. In 50% of CL patients with an inflammatory (secondarily infected) phenotype, detected fungal species had known associations with human cutaneous disease.

CONCLUSIONS

Palm PCR™ performs comparably to conventional PCR for detection of Leishmania, fungi, and mycobacteria. This work has implications for the diagnostic approach to tropical ulcers, and has the potential to improve field detection of ulcerative pathogens in resource constrained areas.

摘要

目的

皮肤利什曼病(CL)与真菌和分枝杆菌引起的溃疡的临床特征重叠,因此需要进行确认性诊断检测。我们评估了一种手持式电池供电的设备,用于检测 CL 以及常见的引起溃疡的真菌和分枝杆菌病原体。

方法

我们使用 ATCC 参考菌株和临床分离株在实验室和现场验证了 Palm PCR™ 对常见溃疡性皮肤病原体的检测,这些分离株包括利什曼原虫、分枝杆菌和真菌。扩增产物进行 Sanger 测序。使用常规 PCR 作为参考标准计算性能特征。

结果

Palm PCR™ 检测到 100%的 ATCC 利什曼原虫、真菌和分枝杆菌菌株,其敏感性和特异性分别为 90%和 91.7%。在现场,对疑似 CL 患者中利什曼原虫的检测敏感性为 100%。在 61%的 CL 患者中,检测到了马拉色菌属、曲霉属、念珠菌属和枝孢属等属的共定植。在 50%具有炎症(继发感染)表型的 CL 患者中,检测到的真菌物种与人类皮肤疾病有已知的关联。

结论

Palm PCR™ 在检测利什曼原虫、真菌和分枝杆菌方面与常规 PCR 相当。这项工作对热带溃疡的诊断方法有影响,并有可能改善资源有限地区对溃疡性病原体的现场检测。

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