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观赏植物C. Wright(爵床科)的完整叶绿体基因组。

The complete chloroplast genome of ornamental plant C.Wright (Acanthaceae).

作者信息

Siyi Feng, Liu ZhiJun, Hui Tang

机构信息

College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou City, P.R. China.

出版信息

Mitochondrial DNA B Resour. 2021 Jun 17;6(7):2017-2018. doi: 10.1080/23802359.2021.1935347. eCollection 2021.

DOI:10.1080/23802359.2021.1935347
PMID:34377786
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8344733/
Abstract

C.Wright is a perennial plant of the Acanthaceae, which has significant ornamental value. Because of its strong adaptability, it is widely planted in Chinese rural areas. Based on sequencing data from Illumina, the first complete chloroplast (cp) genome of C.Wright is reported in this paper. This cp genome was 143,016bp in length, including a large single-copy region (LSC) of 91,857bp, a small single-copy (SSC) of 17,591bp and two inverted repeat regions (IRs) of 16,784bp. It contained 128 genes, 35 transfer RNA genes, 8 ribosomal RNA genes, with an overall GC content of 38.41%. Additionally, the phylogenetic analysis showed that is closely related to (NC_037485) (MT576695) and (NC_039762). The results of this study provide valuable information for the continued study of its species evolution, genetic engineering and germplasm resource utilization.

摘要

C. Wright是爵床科的一种多年生植物,具有重要的观赏价值。因其适应性强,在中国农村地区广泛种植。基于Illumina测序数据,本文报道了C. Wright的首个完整叶绿体(cp)基因组。该cp基因组长度为143,016bp,包括一个91,857bp的大单拷贝区域(LSC)、一个17,591bp的小单拷贝区域(SSC)和两个16,784bp的反向重复区域(IR)。它包含128个基因、35个转运RNA基因、8个核糖体RNA基因,总体GC含量为38.41%。此外,系统发育分析表明,它与(NC_037485)(MT576695)和(NC_039762)密切相关。本研究结果为其物种进化、基因工程和种质资源利用的后续研究提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/278f/8344733/304f093db5cf/TMDN_A_1935347_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/278f/8344733/304f093db5cf/TMDN_A_1935347_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/278f/8344733/304f093db5cf/TMDN_A_1935347_F0001_C.jpg

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本文引用的文献

1
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.tRNAscan-SE在线工具:整合搜索与上下文以分析转运RNA基因
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
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MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.MEGA6:分子进化遗传学分析版本 6.0。
Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.
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CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.
CpGAVAS,一个整合的网络服务器,用于完全测序的叶绿体基因组序列的注释、可视化、分析和 GenBank 提交。
BMC Genomics. 2012 Dec 20;13:715. doi: 10.1186/1471-2164-13-715.
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ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences.ARWEN:一个用于检测后生动物线粒体核苷酸序列中tRNA基因的程序。
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