嗜麦芽窄食单胞菌菌株PE591的基因组草图序列，该菌株是从稀树草原土壤中分离出的一种可降解聚乙烯的细菌。
Draft Genome Sequence of Stenotrophomonas maltophilia Strain PE591, a Polyethylene-Degrading Bacterium Isolated from Savanna Soil.
作者信息
Frederico Tayná Diniz, Peixoto Julianna, de Sousa Jéssica Fernandes, Vizzotto Carla Simone, Steindorff Andrei Stecca, Pinto Otávio Henrique Bezerra, Krüger Ricardo Henrique
机构信息
Enzymology Laboratory, Department of Cell Biology, University of Brasília, Brasília, Brazil.
Department of Civil and Environmental Engineering, University of Brasília, Brasília, Brazil.
出版信息
Microbiol Resour Announc. 2021 Aug 12;10(32):e0049021. doi: 10.1128/MRA.00490-21.
Abstract
We report the genome sequence of a polyethylene-degrading bacterial strain identified as Stenotrophomonas maltophilia strain PE591, which was isolated from plastic debris found in savanna soil. The genome was assembled in 16 scaffolds with a length of 4,751,236 bp, a GC content of 66.5%, and 4,432 predicted genes.
摘要
我们报告了一种被鉴定为嗜麦芽窄食单胞菌菌株PE591的聚乙烯降解细菌菌株的基因组序列，该菌株是从稀树草原土壤中的塑料碎片中分离出来的。基因组组装成16个支架，长度为4,751,236 bp，GC含量为66.5%，预测有4,432个基因。
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1
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Gigascience. 2021 Feb 16;10(2). doi: 10.1093/gigascience/giab008.
2
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Antonie Van Leeuwenhoek. 2020 Oct;113(10):1447-1454. doi: 10.1007/s10482-020-01453-y. Epub 2020 Aug 3.
3
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
4
FastQ Screen: A tool for multi-genome mapping and quality control.
F1000Res. 2018 Aug 24;7:1338. doi: 10.12688/f1000research.15931.2. eCollection 2018.
5
Stenotrophomonas lactitubi sp. nov. and Stenotrophomonas indicatrix sp. nov., isolated from surfaces with food contact.
Int J Syst Evol Microbiol. 2018 Jun;68(6):1830-1838. doi: 10.1099/ijsem.0.002732. Epub 2018 Apr 11.
6
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.
Int J Syst Evol Microbiol. 2018 Jan;68(1):461-466. doi: 10.1099/ijsem.0.002516.
7
BBMerge - Accurate paired shotgun read merging via overlap.
PLoS One. 2017 Oct 26;12(10):e0185056. doi: 10.1371/journal.pone.0185056. eCollection 2017.
8
Brazilian Cerrado soil reveals an untapped microbial potential for unpretreated polyethylene biodegradation.
J Hazard Mater. 2017 Feb 15;324(Pt B):634-644. doi: 10.1016/j.jhazmat.2016.11.037. Epub 2016 Nov 14.
9
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.
Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.
10
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
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