Institute of Virology, University of Veterinary Medicine, 30559 Hannover, Germany.
Nuffield Department of Experimental Medicine, University of Oxford, Peter Medawar Building, South Parks Road, Oxford OX1 3SY, UK.
Viruses. 2021 Aug 4;13(8):1542. doi: 10.3390/v13081542.
Pestiviruses are plus-stranded RNA viruses belonging to the family They comprise several important pathogens like classical swine fever virus and bovine viral diarrhea virus that induce economically important animal diseases. In 2017, the last update of pestivirus taxonomy resulted in demarcation of 11 species designated through . Since then, multiple new pestiviruses have been reported including pathogens associated with disease in pigs or small ruminants. In addition, pestivirus sequences have been found during metagenomics analysis of different non-ungulate hosts (bats, rodents, whale, and pangolin), but the consequences of this pestivirus diversity for animal health still need to be established. To provide a systematic classification of the newly discovered viruses, we analyzed the genetic relationship based on complete coding sequences (cds) and deduced polyprotein sequences and calculated pairwise distances that allow species demarcation. In addition, phylogenetic analysis was performed based on a highly conserved region within the non-structural protein NS5B. Taking into account the genetic relationships observed together with available information about antigenic properties, host origin, and characteristics of disease, we propose to expand the number of pestivirus species to 19 by adding eight additional species designated through .
瘟病毒属于正链 RNA 病毒科,包括几种重要的病原体,如引起重要经济动物疾病的经典猪瘟病毒和牛病毒性腹泻病毒。2017 年,对瘟病毒分类学的最新更新导致通过 划定了 11 个种。自那时以来,已经报告了多种新的瘟病毒,包括与猪或小反刍动物疾病相关的病原体。此外,在对不同非偶蹄类宿主(蝙蝠、啮齿动物、鲸鱼和穿山甲)的宏基因组学分析中发现了瘟病毒序列,但这种瘟病毒多样性对动物健康的影响仍有待确定。为了对新发现的病毒进行系统分类,我们根据完整编码序列 (cds) 和推导的多蛋白序列分析了遗传关系,并计算了允许物种划分的成对距离。此外,还基于非结构蛋白 NS5B 内的一个高度保守区域进行了系统发育分析。考虑到观察到的遗传关系以及关于抗原特性、宿主起源和疾病特征的可用信息,我们建议通过添加 另外 8 个种,将瘟病毒的种数增加到 19 个。