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利用高光谱成像和深度学习对手术标本中的肝脏肿瘤进行可解释的勾画。

Explainable liver tumor delineation in surgical specimens using hyperspectral imaging and deep learning.

作者信息

Zhang Yating, Yu Si, Zhu Xueyu, Ning Xuefei, Liu Wei, Wang Chuting, Liu Xiaohu, Zhao Ding, Zheng Yongchang, Bao Jie

机构信息

Department of Electronic Engineering, Tsinghua University, Beijing 100084, China.

Department of Liver Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Science and Peking Union Medical College, Beijing 100730, China.

出版信息

Biomed Opt Express. 2021 Jun 28;12(7):4510-4529. doi: 10.1364/BOE.432654. eCollection 2021 Jul 1.

Abstract

Surgical removal is the primary treatment for liver cancer, but frequent recurrence caused by residual malignant tissue remains an important challenge, as recurrence leads to high mortality. It is unreliable to distinguish tumors from normal tissues merely under visual inspection. Hyperspectral imaging (HSI) has been proved to be a promising technology for intra-operative use by capturing the spatial and spectral information of tissue in a fast, non-contact and label-free manner. In this work, we investigated the feasibility of HSI for liver tumor delineation on surgical specimens using a multi-task U-Net framework. Measurements are performed on 19 patients and a dataset of 36 specimens was collected with corresponding pathological results serving as the ground truth. The developed framework can achieve an overall sensitivity of 94.48% and a specificity of 87.22%, outperforming the baseline SVM method by a large margin. In particular, we propose to add explanations on the well-trained model from the spatial and spectral dimensions to show the contribution of pixels and spectral channels explicitly. On that basis, a novel saliency-weighted channel selection method is further proposed to select a small subset of 5 spectral channels which provide essentially as much information as using all 224 channels. According to the dominant channels, the absorption difference of hemoglobin and bile content in the normal and malignant tissues seems to be promising markers that could be further exploited.

摘要

手术切除是肝癌的主要治疗方法,但残留恶性组织导致的频繁复发仍然是一个重大挑战,因为复发会导致高死亡率。仅通过肉眼检查来区分肿瘤与正常组织是不可靠的。高光谱成像(HSI)已被证明是一种很有前景的术中使用技术,它能够以快速、非接触且无标记的方式获取组织的空间和光谱信息。在这项工作中,我们使用多任务U-Net框架研究了HSI在手术标本上进行肝肿瘤勾勒的可行性。对19名患者进行了测量,收集了36个标本的数据集,并将相应的病理结果作为基准事实。所开发的框架总体灵敏度可达94.48%,特异性为87.22%,大大优于基线支持向量机(SVM)方法。特别是,我们建议从空间和光谱维度对训练良好的模型进行解释,以明确显示像素和光谱通道的贡献。在此基础上,进一步提出了一种新颖的显著性加权通道选择方法,以选择一个由5个光谱通道组成的小子集,该子集提供的信息与使用所有224个通道基本相同。根据主导通道,正常组织和恶性组织中血红蛋白和胆汁含量的吸收差异似乎是有前景的标志物,可进一步加以利用。

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