将相似性搜索软件与序列检索系统ACNUC相连接。

Interfacing similarity search software with the sequence retrieval system ACNUC.

作者信息

Higgins D G, Gouy M

机构信息

Department of Genetics, Trinity College, Dublin 2, Ireland.

出版信息

Comput Appl Biosci. 1987 Sep;3(3):239-41. doi: 10.1093/bioinformatics/3.3.239.

DOI:10.1093/bioinformatics/3.3.239

PMID:3453234

Abstract

A method of interfacing sequence similarity search software with the fast sequence retrieval system ACNUC is described. The method is written in FORTRAN 77 and is straightforward to implement because no text-processing code is required--a minimum of 12 extra lines of FORTRAN provided the interface for most applications. The method is also efficient, since sequences are located by simple indexing techniques, with no linear searches of large database files necessary.

摘要

描述了一种将序列相似性搜索软件与快速序列检索系统ACNUC进行接口连接的方法。该方法用FORTRAN 77编写，易于实现，因为不需要文本处理代码——只需最少12行额外的FORTRAN代码就能为大多数应用程序提供接口。该方法也很高效，因为通过简单的索引技术就能定位序列，无需对大型数据库文件进行线性搜索。