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超螺旋DNA中B型到Z型转变的动力学

Dynamics of the B-to-Z transition in supercoiled DNA.

作者信息

Pohl F M

出版信息

Proc Natl Acad Sci U S A. 1986 Jul;83(14):4983-7. doi: 10.1073/pnas.83.14.4983.

DOI:10.1073/pnas.83.14.4983
PMID:3460079
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC323873/
Abstract

The sequence (dC-dG)16, inserted into the polylinker of plasmid pUC8, adopts a left-handed Z-DNA conformation at "natural" supercoil density. The radioactively labeled monoclonal antibody Z-D11, which has a very high affinity for this DNA conformation, provides a convenient sensitive tool to measure selectively the amount of Z-DNA. Chloroquine reversibly changes the supercoil density of plasmid DNA and thereby the equilibrium between right- and left-handed double-helical DNA. The time-dependent formation or disappearance of Z-DNA was measured by using the antibody either as a fast indicator of Z-DNA or as an additional effector of the B-to-Z equilibrium. In the middle of the transition, a relaxation time of about 1 hr is observed in 0.1 M NaCl at 22 degrees C. The kinetic data are compatible with an all-or-none transition between the two conformations. The overall rate constant for Z-DNA formation, kBZ, decreases with the square of the chloroquine concentration, while the reverse one, kZB, increases with about the fourth power.

摘要

插入质粒pUC8多克隆位点的序列(dC-dG)16在“天然”超螺旋密度下呈左手Z-DNA构象。对这种DNA构象具有非常高亲和力的放射性标记单克隆抗体Z-D11,提供了一种方便灵敏的工具来选择性地测量Z-DNA的量。氯喹可逆地改变质粒DNA的超螺旋密度,从而改变右手和左手双螺旋DNA之间的平衡。通过将抗体用作Z-DNA的快速指示剂或B-Z平衡的额外效应物来测量Z-DNA随时间的形成或消失。在转变过程中,在22℃的0.1M NaCl中观察到约1小时的弛豫时间。动力学数据与两种构象之间的全或无转变一致。Z-DNA形成的总速率常数kBZ随氯喹浓度的平方而降低,而反向速率常数kZB则随约四次方增加。

相似文献

1
Dynamics of the B-to-Z transition in supercoiled DNA.超螺旋DNA中B型到Z型转变的动力学
Proc Natl Acad Sci U S A. 1986 Jul;83(14):4983-7. doi: 10.1073/pnas.83.14.4983.
2
Hysteretic behaviour of a Z-DNA-antibody complex.
Biophys Chem. 1987 May 9;26(2-3):385-90. doi: 10.1016/0301-4622(87)80038-8.
3
The effect of anti-Z-DNA antibodies on the B-DNA-Z-DNA equilibrium.抗Z-DNA抗体对B-DNA-Z-DNA平衡的影响。
J Biol Chem. 1986 May 15;261(14):6438-43.
4
Left-handed Z-DNA helices in polymers, restriction fragments, and recombinant plasmids.聚合物、限制性片段和重组质粒中的左手Z-DNA螺旋。
J Biomol Struct Dyn. 1983 Dec;1(4):999-1009. doi: 10.1080/07391102.1983.10507498.
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Immunoglobulin recognition of synthetic and natural left-handed Z DNA conformations and sequences.免疫球蛋白对合成及天然左手Z型DNA构象和序列的识别
J Mol Biol. 1984 Jul 5;176(3):369-415. doi: 10.1016/0022-2836(84)90495-9.
6
The sequence (dC-dA)n X (dG-dT)n forms left-handed Z-DNA in negatively supercoiled plasmids.序列(dC-dA)n×(dG-dT)n在负超螺旋质粒中形成左手Z-DNA。
Proc Natl Acad Sci U S A. 1983 Apr;80(7):1821-5. doi: 10.1073/pnas.80.7.1821.
7
Analysis of Z-DNA in fixed polytene chromosomes with monoclonal antibodies that show base sequence-dependent selectivity in reactions with supercoiled plasmids and polynucleotides.利用单克隆抗体分析固定多线染色体中的Z-DNA,这些单克隆抗体在与超螺旋质粒和多核苷酸反应时表现出碱基序列依赖性选择性。
J Biol Chem. 1986 Jan 5;261(1):468-76.
8
Conformational flexibility of junctions between contiguous B- and Z-DNAs in supercoiled plasmids.超螺旋质粒中相邻B型和Z型DNA之间连接区域的构象灵活性。
Proc Natl Acad Sci U S A. 1983 May;80(9):2447-51. doi: 10.1073/pnas.80.9.2447.
9
Energetic and structural inter-relationship between DNA supercoiling and the right- to left-handed Z helix transitions in recombinant plasmids.重组质粒中DNA超螺旋与右手向左手Z螺旋转变之间的能量和结构相互关系。
J Biol Chem. 1982 Sep 10;257(17):10159-65.
10
Negatively supercoiled plasmids contain left-handed Z-DNA segments as detected by specific antibody binding.通过特异性抗体结合检测发现,负超螺旋质粒含有左手Z-DNA片段。
Cell. 1982 Dec;31(2 Pt 1):309-18. doi: 10.1016/0092-8674(82)90124-6.

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本文引用的文献

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Energetics of DNA twisting. II. Topoisomer analysis.DNA 扭曲的能量学。II. 拓扑异构体分析。
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