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使用具有迁移学习的深度贪婪网络通过数字显微成像进行疟疾检测。

Malaria detection through digital microscopic imaging using Deep Greedy Network with transfer learning.

作者信息

Dey Sumagna, Nath Pradyut, Biswas Saptarshi, Nath Subhrapratim, Ganguly Ankur

机构信息

Meghnad Saha Institute of Technology, Department of Computer Science and Engineering, Kolkata, West Bengal, India.

Iowa State University, Ames, Iowa, United States.

出版信息

J Med Imaging (Bellingham). 2021 Sep;8(5):054502. doi: 10.1117/1.JMI.8.5.054502. Epub 2021 Sep 28.

Abstract

In conventional diagnosis, the visual inspection of the malaria parasite in infected red blood cells under a microscope, is done manually by pathologists, which is both laborious and error-prone. Recent studies on automating this process have been conducted using artificial intelligence and feature selection of positional and morphological features from blood smear cell images using convolutional neural network (CNN). However, most deep CNN models do not perform well as per the expectation on small datasets. In this context, we propose a comprehensive computer-aided diagnosis scheme for automating the detection of malaria parasites in thin blood smear images using deep CNN, where transfer learning is used for optimizing the feature selection process. As an extra layer of security, layer embeddings are extracted from the intermediate convolutional layers using the feature matrix to cross-check the selection of features in the intermediate layers. The proposal includes the utilization of the ResNet 152 model integrated with the Deep Greedy Network for training, which produces an enhanced quality of prediction. The performance of the proposed hybrid model has been evaluated concerning the evaluation metrics such as accuracy, precision, recall, specificity, and F1-score, which has been further compared with the pre-existing deep learning algorithms. The comparative analysis of the results reported based on the accuracy metrics demonstrates promising outcomes concerning the other models. Lastly, the embedding extraction from the intermediate hidden layers and their visual analysis also provides an opportunity for manual verification of the performance of the trained model.

摘要

在传统诊断中,由病理学家在显微镜下对感染红细胞中的疟原虫进行目视检查,这既费力又容易出错。最近已经开展了关于使用人工智能以及利用卷积神经网络(CNN)从血涂片细胞图像中进行位置和形态特征的特征选择来实现这一过程自动化的研究。然而,大多数深度CNN模型在小数据集上的表现并未达到预期。在这种背景下,我们提出了一种全面的计算机辅助诊断方案,用于使用深度CNN自动检测薄血涂片图像中的疟原虫,其中迁移学习用于优化特征选择过程。作为额外的安全保障,使用特征矩阵从中间卷积层提取层嵌入,以交叉检查中间层特征的选择。该方案包括利用与深度贪婪网络集成的ResNet 152模型进行训练,这会产生更高质量的预测。已根据准确性、精确率、召回率、特异性和F1分数等评估指标对所提出的混合模型的性能进行了评估,并与现有的深度学习算法进行了进一步比较。基于准确性指标报告的结果的对比分析表明,与其他模型相比有很有前景的结果。最后,从中间隐藏层提取嵌入及其可视化分析也为人工验证训练模型的性能提供了机会。

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