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在.发育种子中对干旱胁迫和/或根肿病感染反应的RNA测序数据。 (你提供的原文似乎不完整,缺少具体物种等关键信息)

RNA sequencing data for responses to drought stress and/or clubroot infection in developing seeds of .

作者信息

Bianchetti Grégoire, Clouet Vanessa, Legeai Fabrice, Baron Cécile, Gazengel Kévin, Carrillo Aurélien, Manzanares-Dauleux Maria J, Buitink Julia, Nesi Nathalie

机构信息

IGEPP, INRAE, Institut Agro, Université de Rennes 1, BP35327, Le Rheu 35650, France.

IRHS, INRAE, Institut Agro, Université d'Angers, SFR4207 QuaSaV, Beaucouzé 49070, France.

出版信息

Data Brief. 2021 Sep 20;38:107392. doi: 10.1016/j.dib.2021.107392. eCollection 2021 Oct.

Abstract

Oilseed rape ( L.) is the third largest oil crop worldwide. Like other crops, oilseed rape faces unfavorable environmental conditions resulting from multiple and combined actions of abiotic and biotic constraints that occur throughout the growing season. In particular drought severely reduces seed yield but also impacts seed quality in oilseed rape. In addition, clubroot disease, caused by the pathogen , limits the yield of the oilseed rape crops grown in infected areas. Clubroot induces swellings or galls on the roots that decrease the flow of water and nutrients within the plant. Furthermore, combinations of different stresses lead to complex plant responses that can not be predicted by the simple addition of individual stress responses. Indeed, an abiotic constraint can either reduce or stimulate the plant response to a pathogen or pest. Transcriptome datasets from different conditions are key resources to improve our knowledge of environmental stress-resistance mechanisms in plant organs. Here, we describe a RNA-seq dataset consisting of 72 samples of immature seeds from plants grown either under drought, infected with , or a combination of both stresses. A total of 67.6 Gb of transcriptome paired-end reads were filtered, mapped onto the reference genome Darmor- and used for identification of differentially expressed genes and gene ontology enrichment. The raw reads are available under accession PRJNA738318 at NCBI Sequence Read Archive (SRA) repository. The dataset is a resource for the scientific community exploring seed plasticity.

摘要

油菜(L.)是全球第三大油料作物。与其他作物一样,油菜在整个生长季节面临着由非生物和生物胁迫的多重和综合作用导致的不利环境条件。特别是干旱会严重降低油菜籽产量,还会影响种子质量。此外,由病原体引起的根肿病限制了感染地区种植的油菜作物的产量。根肿病会导致根部肿胀或形成瘿瘤,从而减少植物体内水分和养分的流动。此外,不同胁迫的组合会导致复杂的植物反应,这些反应无法通过简单相加个体胁迫反应来预测。事实上,非生物胁迫既可以降低也可以刺激植物对病原体或害虫的反应。来自不同条件的转录组数据集是提高我们对植物器官环境胁迫抗性机制认识的关键资源。在这里,我们描述了一个RNA测序数据集,该数据集由来自在干旱、感染或两种胁迫组合条件下生长的植物的72个未成熟种子样本组成。总共67.6 Gb的转录组双端读数经过筛选,映射到参考基因组Darmor-上,并用于鉴定差异表达基因和基因本体富集分析。原始读数可在NCBI序列读数存档库(SRA)中以PRJNA738318的登录号获取。该数据集是科学界探索种子可塑性的一个资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/71ec/8477133/7d4242ee418e/gr1.jpg

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