日本野生开花樱桃（蔷薇科）的完整叶绿体基因组
Complete chloroplast genome of (Rosaceae), a wild flowering cherry from Japan.
作者信息
Sheng Dong, Zhou Lu-Dan, Katsuki Toshio, Sun Zhong-Shuai, Liu Xin-Hong
机构信息
Zhejiang Academy of Forestry, Hangzhou, China.
College of Life Sciences, Taizhou University, Taizhou, China.
出版信息
Mitochondrial DNA B Resour. 2019 Dec 13;5(1):262-263. doi: 10.1080/23802359.2019.1699459.
is a flowering tree species with high ornamental and economic values. We determined the first complete chloroplast genome of using genome skimming approach. The cp genome was 157,813 bp long, with a large single-copy region (LSC) of 85,931 bp and a small single-copy region (SSC) of 19,120 bp separated by a pair of inverted repeats (IRs) of 26,381 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that is closely related with var. .
是一种具有高观赏和经济价值的开花树种。我们使用基因组浅层测序方法确定了 的首个完整叶绿体基因组。叶绿体基因组长度为157,813 bp，有一个85,931 bp的大单拷贝区域（LSC）和一个19,120 bp的小单拷贝区域（SSC），由一对26,381 bp的反向重复序列（IRs）分隔。它编码129个基因，包括84个蛋白质编码基因、37个tRNA基因和8个核糖体RNA基因。我们还使用最大似然法（ML）重建了 的系统发育，包括我们的数据和先前报道的相关类群的叶绿体基因组。系统发育分析表明， 与 变种 密切相关。
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