野生日本山樱（蔷薇科）的完整叶绿体基因组
Complete chloroplast genome of the wild Japanese Mountain cherry (, Rosaceae).
作者信息
Yi Xian-Gui, Chen Jie, Li Meng, Zhu Hong, Sun Zhong-Shuai, Katsuki Toshio, Wang Xian-Rong
机构信息
Co-Innovation Center for the Sustainable Forestry in Southern China; Cerasus Research Center; College of Biology and the Environment, Nanjing Forestry University, Nanjing, China.
Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, China.
出版信息
Mitochondrial DNA B Resour. 2019 Dec 13;5(1):290-291. doi: 10.1080/23802359.2019.1699463.
is a species of Prunus native to eastern Asia. We determined the first complete chloroplast genome of using genome skimming approach. The cp genome was 157,905 bp long, with a large single-copy region (LSC) of 85,910 bp and a small single-copy region (SSC) of 19,123 bp separated by a pair of inverted repeats (IRs) of 26,436 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that is closely related with .
是一种原产于东亚的李属物种。我们采用基因组浅层测序方法确定了其首个完整叶绿体基因组。叶绿体基因组长度为157,905 bp，有一个85,910 bp的大单拷贝区域（LSC）和一个19,123 bp的小单拷贝区域（SSC），由一对26,436 bp的反向重复序列（IR）隔开。它编码129个基因，包括84个蛋白质编码基因、37个tRNA基因和8个核糖体RNA基因。我们还使用最大似然法（ML）重建了其系统发育，包括我们的数据和先前报道的相关类群的叶绿体基因组。系统发育分析表明与密切相关。
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