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群体的智慧:一种关于细菌中小RNA介导调控的多基因计划建议

Wisdom of the crowds: A suggested polygenic plan for small-RNA-mediated regulation in bacteria.

作者信息

Goldberger Omer, Livny Jonathan, Bhattacharyya Roby, Amster-Choder Orna

机构信息

Department of Microbiology and Molecular Genetics, IMRIC, The Hebrew University Faculty of Medicine, P.O.Box 12272, Jerusalem 91120, Israel.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02140, USA.

出版信息

iScience. 2021 Sep 10;24(10):103096. doi: 10.1016/j.isci.2021.103096. eCollection 2021 Oct 22.

Abstract

The omnigenic/polygenic theory, which states that complex traits are not shaped by single/few genes, but by situation-specific large networks, offers an explanation for a major enigma in microbiology: deletion of specific small RNAs (sRNAs) playing key roles in various aspects of bacterial physiology, including virulence and antibiotic resistance, results in surprisingly subtle phenotypes. A recent study uncovered polar accumulation of most sRNAs upon osmotic stress, the majority not known to be involved in the applied stress. Here we show that cells deleted for a handful of pole-enriched sRNAs exhibit fitness defect in several stress conditions, as opposed to single, double, or triple sRNA-knockouts, implying that regulation by sRNA relies on sets of genes. Moreover, analysis of RNA-seq data of and exposed to antibiotics and/or infection-relevant conditions reveals the involvement of multiple sRNAs in all cases, in line with the existence of a polygenic plan for sRNA-mediated regulation.

摘要

全基因/多基因理论认为,复杂性状并非由单个/少数基因塑造,而是由特定情况下的大型网络塑造,这为微生物学中的一个主要谜团提供了解释:删除在细菌生理学各个方面(包括毒力和抗生素抗性)发挥关键作用的特定小RNA(sRNA),会导致出人意料的细微表型。最近一项研究发现,大多数sRNA在渗透胁迫下会在细胞两极积累,其中大多数sRNA并不参与所施加的胁迫。在此我们表明,与单个、双个或三个sRNA基因敲除相反,缺失少数几个富集于细胞两极的sRNA的细胞在几种胁迫条件下表现出适应性缺陷,这意味着sRNA的调控依赖于一组基因。此外,对暴露于抗生素和/或感染相关条件下的细胞的RNA测序数据进行分析发现,在所有情况下都有多个sRNA参与其中,这与存在一个sRNA介导调控的多基因计划相符。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f79/8479692/ebf32991f248/fx1.jpg

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