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新种,一种从人类粪便中分离出来的共生螺旋体。

sp. nov., a commensal spirochaete isolated from human faeces.

机构信息

Laboratory of Molecular Bacteriology, Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium.

Center for Microbiology, VIB, Leuven, Belgium.

出版信息

Int J Syst Evol Microbiol. 2021 Oct;71(10). doi: 10.1099/ijsem.0.005050.

Abstract

A Gram-stain-negative, obligatory anaerobic spirochaete (RCC2812) was isolated from a faecal sample obtained from an individual residing in a remote Amazonian community in Peru. The bacterium showed highest 16S rRNA gene sequence similarity to the pig intestinal spirochete (89.48 %). Average nucleotide identity values between strain RCC2812 and all available genomes from validated type strains were all <73 %, thus clearly lower than the species delineation threshold. The DNA G+C content of RCC2812 was 41.24 mol%. Phenotypic characterization using the API-ZYM and API 20A systems confirmed the divergent position of this bacterium within the genus . Strain RCC2812 could be differentiated from the phylogenetically most closely related by the presence of alkaline phosphatase and α -glucosidase activities. Unlike , strain RCC2812 grew equally well with or without serum. Strain RCC2812 is the first commensal isolated from the human faecal microbiota of remote populations, and based on the collected data represents a novel species for which the name sp. nov. is proposed. The type strain is RCC2812 (=LMG 31794=CIP 111910).

摘要

一株革兰氏阴性、专性厌氧的螺旋体(RCC2812)从居住在秘鲁偏远亚马逊社区的个体的粪便样本中分离得到。该细菌与猪肠道螺旋体(89.48%)的 16S rRNA 基因序列最相似。RCC2812 菌株与所有已验证的模式株的全基因组平均核苷酸同一性值均<73%,明显低于种的划定阈值。RCC2812 的 DNA G+C 含量为 41.24mol%。API-ZYM 和 API 20A 系统的表型特征鉴定证实了该细菌在属内的独特位置。RCC2812 菌株与系统发育上最接近的种的区别在于碱性磷酸酶和α-葡萄糖苷酶的活性。与 不同,RCC2812 菌株无论有无血清均可同等良好地生长。RCC2812 菌株是从偏远人群的人类粪便微生物群中分离出来的第一株共生 ,根据收集的数据,它代表了一个新的种,建议命名为 sp. nov.。模式株为 RCC2812(=LMG 31794=CIP 111910)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f515/8604162/e00f773808e2/ijsem-71-5050-g001.jpg

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