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评估降低 COVID-19 发病率的人群抽样策略。

Assessing population-sampling strategies for reducing the COVID-19 incidence.

机构信息

Universidad Carlos III de Madrid, Leganes, Spain.

Barcelona Supercomputing Center, Barcelona, Spain.

出版信息

Comput Biol Med. 2021 Dec;139:104938. doi: 10.1016/j.compbiomed.2021.104938. Epub 2021 Oct 12.

Abstract

As long as critical levels of vaccination have not been reached to ensure heard immunity, and new SARS-CoV-2 strains are developing, the only realistic way to reduce the infection speed in a population is to track the infected individuals before they pass on the virus. Testing the population via sampling has shown good results in slowing the epidemic spread. Sampling can be implemented at different times during the epidemic and may be done either per individual or for combined groups of people at a time. The work we present here makes two main contributions. We first extend and refine our scalable agent-based COVID-19 simulator to incorporate an improved socio-demographic model which considers professions, as well as a more realistic population mixing model based on contact matrices per country. These extensions are necessary to develop and test various sampling strategies in a scenario including the 62 largest cities in Spain; this is our second contribution. As part of the evaluation, we also analyze the impact of different parameters, such as testing frequency, quarantine time, percentage of quarantine breakers, or group testing, on sampling efficacy. Our results show that the most effective strategies are pooling, rapid antigen test campaigns, and requiring negative testing for access to public areas. The effectiveness of all these strategies can be greatly increased by reducing the number of contacts for infected individual.

摘要

只要尚未达到确保群体免疫的关键疫苗接种水平,并且新的 SARS-CoV-2 毒株仍在不断出现,那么降低人群感染速度的唯一现实途径就是在感染者传播病毒之前对其进行追踪。通过抽样对人群进行检测已被证明可以有效减缓疫情传播。抽样可以在疫情的不同阶段进行,既可以对个体进行检测,也可以对一次多人的组合进行检测。我们在此展示的工作主要有两个贡献。首先,我们扩展和改进了可扩展的基于代理的 COVID-19 模拟器,以纳入改进的社会人口模型,该模型考虑了职业,以及基于每个国家的接触矩阵的更现实的人群混合模型。这些扩展对于在包括西班牙 62 个最大城市在内的场景中开发和测试各种抽样策略是必要的;这是我们的第二个贡献。作为评估的一部分,我们还分析了不同参数(如检测频率、隔离时间、隔离违规者的百分比或组检测)对抽样效果的影响。我们的研究结果表明,最有效的策略是混检、快速抗原检测运动以及要求进入公共场所时进行阴性检测。通过减少感染者的接触人数,可以大大提高所有这些策略的有效性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ac2/8669080/b99357331aa0/fx1.jpg

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