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与属的比较:保护、适应性进化和特定毒力基因

versus Genus : Conservation, Adaptive Evolution and Specific Virulence Genes.

作者信息

Gupta Shishir K, Srivastava Mugdha, Osmanoglu Özge, Xu Zhuofei, Brakhage Axel A, Dandekar Thomas

机构信息

Functional Genomics & Systems Biology Group, Department of Bioinformatics, Biocenter, Am Hubland, University of Wuerzburg, D-97074 Wuerzburg, Germany.

Core Unit Systems Medicine, University of Wuerzburg, D-97080 Wuerzburg, Germany.

出版信息

Microorganisms. 2021 Sep 23;9(10):2014. doi: 10.3390/microorganisms9102014.

Abstract

is an important fungal genus containing economically important species, as well as pathogenic species of animals and plants. Using eighteen fungal species of the genus , we conducted a comprehensive investigation of conserved genes and their evolution. This also allows us to investigate the selection pressure driving the adaptive evolution in the pathogenic species Among single-copy orthologs (SCOs) for and the closely related species , we identified 122 versus 50 positively selected genes (PSGs), respectively. Moreover, twenty conserved genes of unknown function were established to be positively selected and thus important for adaption. PSGs interacting with human host proteins show over-representation of adaptive, symbiosis-related, immunomodulatory and virulence-related pathways, such as the TGF-β pathway, insulin receptor signaling, IL1 pathway and interfering with phagosomal GTPase signaling. Additionally, among the virulence factor coding genes, secretory and membrane protein-coding genes in multi-copy gene families, 212 genes underwent positive selection and also suggest increased adaptation, such as fungal immune evasion mechanisms (), siderophore biosynthesis (), fumarylalanine production (), stress tolerance () and thermotolerance (). These genes presumably contribute to host adaptation strategies. Genes for the biosynthesis of gliotoxin are shared among all the close relatives of as an ancient defense mechanism. Positive selection plays a crucial role in the adaptive evolution of . The genome-wide profile of PSGs provides valuable targets for further research on the mechanisms of immune evasion, antimycotic targeting and understanding fundamental virulence processes.

摘要

是一个重要的真菌属,包含具有经济重要性的物种以及动植物的致病物种。我们使用该属的18种真菌物种,对保守基因及其进化进行了全面研究。这也使我们能够研究驱动致病物种适应性进化的选择压力。在与密切相关物种的单拷贝直系同源基因(SCO)中,我们分别鉴定出122个和50个正选择基因(PSG)。此外,确定了20个功能未知的保守基因被正选择,因此对适应性很重要。与人类宿主蛋白相互作用的PSG显示出适应性、共生相关、免疫调节和毒力相关途径的过度富集,如TGF-β途径、胰岛素受体信号传导、IL1途径以及干扰吞噬体GTPase信号传导。此外,在毒力因子编码基因、多拷贝基因家族中的分泌和膜蛋白编码基因中,有212个基因经历了正选择,也表明适应性增加,如真菌免疫逃避机制()、铁载体生物合成()、富马酰丙氨酸产生()、应激耐受性()和耐热性()。这些基因可能有助于宿主适应策略。作为一种古老的防御机制,在所有的近亲中都存在着胶霉毒素生物合成基因。正选择在的适应性进化中起着至关重要的作用。PSG的全基因组概况为进一步研究免疫逃避机制、抗真菌靶向以及理解基本毒力过程提供了有价值的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80b8/8539515/07d522d33194/microorganisms-09-02014-g001.jpg

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