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来自捷克共和国的ST195多重耐药临床分离株的耐药基因组和系统发育基因组学见解

Insights into the Resistome and Phylogenomics of a ST195 Multidrug-Resistant Clinical Isolate from the Czech Republic.

作者信息

Mlynarcik Patrik, Dolejska Monika, Vagnerova Iva, Petrzelova Jana, Sukkar Iva, Zdarska Veronika, Kolar Milan

机构信息

Department of Microbiology, Faculty of Medicine and Dentistry, Palacky University Olomouc, 77515 Olomouc, Czech Republic.

Department of Biology and Wildlife Diseases, Faculty of Veterinary Hygiene and Ecology, University of Veterinary Sciences Brno, 61242 Brno, Czech Republic.

出版信息

Life (Basel). 2021 Oct 13;11(10):1079. doi: 10.3390/life11101079.

DOI:10.3390/life11101079
PMID:34685451
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8537504/
Abstract

Increasing antimicrobial resistance in nosocomial pathogens, such as , is becoming a serious threat to public health. It is necessary to detect -lactamase-producing microorganisms in clinical settings to be able to control the spread of carbapenem resistance. This study was conducted to evaluate the presence of -lactamases in a selected clinical isolate of of ST2/ST195 and to characterize possible enzymes, as well as its -lactam resistome, using PCR and whole-genome sequencing analysis. PCR and sequencing confirmed that the isolate harbored five gene alleles, namely, , , , and , as well as aminoglycosides, macrolides, sulfonamides and tetracyclines resistance determinants, which were either chromosomally and/or plasmid located. Furthermore, a gene order comparison using MAUVE alignment showed multiple changes compared with the clinical isolate of Malaysian AC30 genome and 76 regions with high homology. This study suggests that resistance to -lactams in this isolate is mainly due to an overproduction of -lactamases in combination with other resistance mechanism (efflux pump system).

摘要

医院病原体(如……)中日益增加的抗菌药物耐药性正成为对公众健康的严重威胁。有必要在临床环境中检测产β-内酰胺酶的微生物,以便能够控制碳青霉烯类耐药性的传播。本研究旨在评估ST2/ST195型某临床分离株中β-内酰胺酶的存在情况,并使用PCR和全基因组测序分析来鉴定可能的酶及其β-内酰胺耐药基因组。PCR和测序证实该分离株携带五个bla基因等位基因,即……以及氨基糖苷类、大环内酯类、磺胺类和四环素类耐药决定簇,这些基因决定簇位于染色体和/或质粒上。此外,使用MAUVE比对进行的基因顺序比较显示,与马来西亚某分离株AC30基因组的临床分离株相比有多处变化,且有76个区域具有高度同源性。本研究表明,该分离株对β-内酰胺类药物的耐药性主要是由于β-内酰胺酶的过量产生以及其他耐药机制(外排泵系统)共同作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/0b0dc851059e/life-11-01079-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/5ad993cea4c3/life-11-01079-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/1382f05094c0/life-11-01079-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/377ee8012900/life-11-01079-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/0b0dc851059e/life-11-01079-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/5ad993cea4c3/life-11-01079-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/1382f05094c0/life-11-01079-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/377ee8012900/life-11-01079-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8792/8537504/0b0dc851059e/life-11-01079-g004.jpg

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本文引用的文献

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Detection of clinically important β-lactamases by using PCR.采用 PCR 检测临床重要的β-内酰胺酶。
FEMS Microbiol Lett. 2021 Jun 16;368(11). doi: 10.1093/femsle/fnab068.
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Continuous Evolution: Perspective on the Epidemiology of Carbapenemase Resistance Among Enterobacterales and Other Gram-Negative Bacteria.持续演变:肠杆菌科细菌及其他革兰氏阴性菌对碳青霉烯类耐药的流行病学视角
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Implementation of Antibiotic Stewardship in a University Hospital Setting.
大学医院环境中抗生素管理的实施
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PCR Detection of Oxacillinases in Bacteria.PCR 检测细菌中的耐甲氧西林酶。
Microb Drug Resist. 2020 Sep;26(9):1023-1037. doi: 10.1089/mdr.2019.0330. Epub 2020 Mar 26.
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Extended-spectrum resistance to β-lactams/β-lactamase inhibitors (ESRI) evolved from low-level resistant Escherichia coli.产超广谱β-内酰胺酶/β-内酰胺酶抑制剂的耐药性(ESRI)是由低水平耐药的大肠埃希菌演变而来。
J Antimicrob Chemother. 2020 Jan 1;75(1):77-85. doi: 10.1093/jac/dkz393.
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Mutation of CarO participates in drug resistance in imipenem-resistant Acinetobacter baumannii.CarO 突变参与耐亚胺培南鲍曼不动杆菌的耐药性。
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Wellcome Open Res. 2018 Sep 24;3:124. doi: 10.12688/wellcomeopenres.14826.1. eCollection 2018.
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Identification of novel OXA-134-like β-lactamases in Acinetobacter lwoffii and Acinetobacter schindleri isolated from chicken litter.从鸡舍垫料中分离的洛菲不动杆菌和施氏不动杆菌中新型OXA-134样β-内酰胺酶的鉴定
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