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基于趋化因子家族的风险模型系统分析预测肺腺癌临床结局和免疫治疗反应。

Systematic Analyses of a Chemokine Family-Based Risk Model Predicting Clinical Outcome and Immunotherapy Response in Lung Adenocarcinoma.

机构信息

Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University, Wuhan, China.

Hubei Key Laboratory of Tumor Biological Behaviors, Zhongnan Hospital of Wuhan University, Wuhan, China.

出版信息

Cell Transplant. 2021 Jan-Dec;30:9636897211055046. doi: 10.1177/09636897211055046.

DOI:10.1177/09636897211055046
PMID:34705571
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8554550/
Abstract

Chemokines exhibited complicated functions in antitumor immunity, with their expression profile and clinical importance of lung adenocarcinoma (LUAD) patients remaining largely undetermined. This study aimed to explore the expression patterns of chemokine family in LUAD and construct a predictive chemokine family-based signature. A total of 497 samples were downloaded from the Cancer Genome Atlas (TCGA) data portal as the training set, and the combination of 4 representative Gene Expression Omnibus (GEO) datasets, including GSE30219, GSE50081, GSE37745, and GSE31210, were utilized as the validation set. A three gene-based signature was constructed using univariate and stepwise multivariate Cox regression analysis, classifying patients into high and low risk groups according to the overall survival. The independent GEO datasets were utilized to validate this signature. Another multivariate analysis revealed that this signature remained an independent prognostic factor in LUAD patients. Furthermore, patients in the low risk group featured immunoactive tumor microenvironment (TME), higher IPS scores and lower TIDE scores, and was regarded as the potential beneficiaries of immunotherapy. Finally, the role of risky CCL20 was validated by immunohistochemistry (IHC), and patients possessed higher CCL20 expression presented shorter overall survival ( = 0.011).

摘要

趋化因子在抗肿瘤免疫中表现出复杂的功能,但它们在肺腺癌 (LUAD) 患者中的表达谱和临床重要性在很大程度上仍未确定。本研究旨在探索 LUAD 中趋化因子家族的表达模式,并构建预测性趋化因子家族为基础的特征。共从癌症基因组图谱 (TCGA) 数据门户下载了 497 个样本作为训练集,使用了包括 GSE30219、GSE50081、GSE37745 和 GSE31210 在内的 4 个代表性基因表达综合 (GEO) 数据集的组合作为验证集。使用单变量和逐步多变量 Cox 回归分析构建了一个基于 3 个基因的特征,根据总生存期将患者分为高风险和低风险组。利用独立的 GEO 数据集对该特征进行了验证。另一个多变量分析显示,该特征仍然是 LUAD 患者的独立预后因素。此外,低风险组的患者具有免疫活性肿瘤微环境 (TME),更高的 IPS 评分和更低的 TIDE 评分,被认为是免疫治疗的潜在受益者。最后,通过免疫组织化学 (IHC) 验证了危险的 CCL20 的作用,具有更高 CCL20 表达的患者总生存期更短 (=0.011)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/0a12d3760240/10.1177_09636897211055046-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/a00dd9b8a1c3/10.1177_09636897211055046-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/e501c10e62e7/10.1177_09636897211055046-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/6668b7b80cb8/10.1177_09636897211055046-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/5a7f2ff40f0a/10.1177_09636897211055046-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/38aca153e8f8/10.1177_09636897211055046-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/65afc2139ad4/10.1177_09636897211055046-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/45f547e71899/10.1177_09636897211055046-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/0a12d3760240/10.1177_09636897211055046-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/a00dd9b8a1c3/10.1177_09636897211055046-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/e501c10e62e7/10.1177_09636897211055046-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/6668b7b80cb8/10.1177_09636897211055046-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/5a7f2ff40f0a/10.1177_09636897211055046-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/38aca153e8f8/10.1177_09636897211055046-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/65afc2139ad4/10.1177_09636897211055046-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/45f547e71899/10.1177_09636897211055046-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3ab/8554550/0a12d3760240/10.1177_09636897211055046-fig8.jpg

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