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走马胎叶绿体全基因组测序及系统发育分析

Sequencing and phylogenetic analysis of the complete chloroplast genome of Blume.

作者信息

Yi Shanyong, Xu Tao, Song Xiangwen, Wang Wei, Yu Wangyang, Han Bangxing

机构信息

Department of Biological and Pharmaceutical Engineering, West Anhui University, Lu'an, P.R. China.

Anhui Engineering Laboratory for Conservation and Sustainable Utilization of Traditional Chinese Medicine Resources, West Anhui University, Lu'an, P.R. China.

出版信息

Mitochondrial DNA B Resour. 2021 Oct 23;6(11):3297-3299. doi: 10.1080/23802359.2021.1993460. eCollection 2021.

DOI:10.1080/23802359.2021.1993460
PMID:34712816
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8547874/
Abstract

Blume is a perennial medicinal herb widely distributed in China, Korea and Japan. In this study, the complete chloroplast genome sequence of was assembled and characterized based on high-throughput sequencing data. The whole chloroplast genome is 170,610 bp in length and contains 95,485 bp large single-copy (LSC) and 22,605 bp small single-copy (SSC) regions separated by a pair of 26,260 bp inverted repeat (IR) regions. It contained a total of 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes, with an overall GC content of 34.5%. A phylogenetic tree reconstructed by 30 chloroplast genomes reveals that is mostly related to the same genus and The complete chloroplast genome of was the firstly reported and deposited at GenBank under accession number MZ424448.

摘要

积雪草是一种多年生药用草本植物,在中国、韩国和日本广泛分布。在本研究中,基于高通量测序数据组装并表征了积雪草的完整叶绿体基因组序列。整个叶绿体基因组长度为170,610 bp,包含95,485 bp的大单拷贝(LSC)和22,605 bp的小单拷贝(SSC)区域,由一对26,260 bp的反向重复(IR)区域隔开。它总共包含129个基因,包括84个蛋白质编码基因、37个tRNA基因和8个rRNA基因,总体GC含量为34.5%。由30个叶绿体基因组重建的系统发育树表明,积雪草与同属的其他植物关系最为密切。积雪草的完整叶绿体基因组首次被报道,并以登录号MZ424448保存在GenBank中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c824/8547874/6ef4368ff98e/TMDN_A_1993460_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c824/8547874/6ef4368ff98e/TMDN_A_1993460_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c824/8547874/6ef4368ff98e/TMDN_A_1993460_F0001_C.jpg

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