Departments of Physics and Integrative Biology, University of California, Berkeley, CA 94720, USA.
RIKEN iTHEMS, Wako, Saitama 351-0198, Japan.
Genetics. 2021 Dec 10;219(4). doi: 10.1093/genetics/iyab135.
Natural populations often show enhanced genetic drift consistent with a strong skew in their offspring number distribution. The skew arises because the variability of family sizes is either inherently strong or amplified by population expansions. The resulting allele-frequency fluctuations are large and, therefore, challenge standard models of population genetics, which assume sufficiently narrow offspring distributions. While the neutral dynamics backward in time can be readily analyzed using coalescent approaches, we still know little about the effect of broad offspring distributions on the forward-in-time dynamics, especially with selection. Here, we employ an asymptotic analysis combined with a scaling hypothesis to demonstrate that over-dispersed frequency trajectories emerge from the competition of conventional forces, such as selection or mutations, with an emerging time-dependent sampling bias against the minor allele. The sampling bias arises from the characteristic time-dependence of the largest sampled family size within each allelic type. Using this insight, we establish simple scaling relations for allele-frequency fluctuations, fixation probabilities, extinction times, and the site frequency spectra that arise when offspring numbers are distributed according to a power law.
自然种群中经常出现与后代数量分布强烈偏斜一致的遗传漂变增强。这种偏斜是由于家庭规模的可变性要么固有地很强,要么被种群扩张放大。由此产生的等位基因频率波动很大,因此挑战了种群遗传学的标准模型,这些模型假设后代分布足够狭窄。虽然可以使用合并方法轻松分析向后的中性动态,但我们对广泛的后代分布对向前动态的影响,特别是与选择的影响,仍然知之甚少。在这里,我们采用渐近分析结合缩放假设来证明,过度分散的频率轨迹是由传统力量(如选择或突变)之间的竞争以及对次要等位基因的新兴时间相关采样偏差共同产生的。采样偏差源于每个等位基因类型中最大采样家族规模的特征时间依赖性。利用这一见解,我们为等位基因频率波动、固定概率、灭绝时间以及当后代数量按照幂律分布时出现的位点频率谱建立了简单的缩放关系。