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基于物理模型并结合通道注意力机制的傅里叶叠层显微镜学习方法

Physics-based learning with channel attention for Fourier ptychographic microscopy.

作者信息

Zhang Jizhou, Xu Tingfa, Li Jianan, Zhang Yuhan, Jiang Shenwang, Chen Yiwen, Zhang Jinhua

机构信息

Ministry of Education Key Laboratory of Photoelectronic Imaging Technology and System, School of Optics and Photonics, Beijing Institute of Technology, Beijing, China.

Beijing Institute of Technology Chongqing Innovation Center, Chongqing, China.

出版信息

J Biophotonics. 2022 Mar;15(3):e202100296. doi: 10.1002/jbio.202100296. Epub 2021 Nov 28.

DOI:10.1002/jbio.202100296
PMID:34730877
Abstract

Fourier ptychographic microscopy (FPM) is a computational imaging technology for large field-of-view, high resolution and quantitative phase imaging. In FPM, low-resolution intensity images captured with angle-varying illumination are synthesized in Fourier space with phase retrieval approaches. However, system errors such as pupil aberration and light-emitting diode (LED) intensity error seriously affect the reconstruction performance. In this article, we propose a physics-based neural network with channel attention for FPM reconstruction. With the channel attention module, which is introduced into physics-based neural networks for the first time, the spatial distribution of LED intensity can be adaptively corrected. Besides, the channel attention module is used to synthesize different Zernike modes and recover the pupil function. Detailed simulations and experiments are carried out to validate the effectiveness and robustness of the proposed method. The results demonstrate that our method achieves better performance in high-resolution complex field reconstruction, LED intensity correction and pupil function recovery compared with the state-of-art methods. The combination with deep neural network structures like channel attention modules significantly enhance the performance of physics-based neural networks and will promote the application of FPM in practical use.

摘要

傅里叶叠层显微镜(FPM)是一种用于大视场、高分辨率和定量相位成像的计算成像技术。在FPM中,通过相位恢复方法在傅里叶空间中合成利用变角度照明捕获的低分辨率强度图像。然而,诸如光瞳像差和发光二极管(LED)强度误差等系统误差会严重影响重建性能。在本文中,我们提出了一种用于FPM重建的带通道注意力的基于物理的神经网络。通过首次引入基于物理的神经网络的通道注意力模块,可以自适应地校正LED强度的空间分布。此外,通道注意力模块用于合成不同的泽尼克模式并恢复光瞳函数。进行了详细的模拟和实验以验证所提方法的有效性和鲁棒性。结果表明,与现有方法相比,我们的方法在高分辨率复杂场重建、LED强度校正和光瞳函数恢复方面具有更好的性能。与通道注意力模块等深度神经网络结构相结合,显著提高了基于物理的神经网络的性能,并将促进FPM在实际应用中的应用。

相似文献

1
Physics-based learning with channel attention for Fourier ptychographic microscopy.基于物理模型并结合通道注意力机制的傅里叶叠层显微镜学习方法
J Biophotonics. 2022 Mar;15(3):e202100296. doi: 10.1002/jbio.202100296. Epub 2021 Nov 28.
2
Fourier ptychographic microscopy with untrained deep neural network priors.基于无监督深度神经网络先验的傅里叶叠层显微术。
Opt Express. 2022 Oct 24;30(22):39597-39612. doi: 10.1364/OE.472171.
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Fast and robust Fourier ptychographic microscopy with position misalignment correction.具有位置失配校正的快速稳健傅里叶叠层显微镜。
J Biomed Opt. 2023 Nov;28(11):116503. doi: 10.1117/1.JBO.28.11.116503. Epub 2023 Nov 28.
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Adaptive correction method of hybrid aberrations in Fourier ptychographic microscopy.傅里叶叠层显微镜中混合像差的自适应校正方法。
J Biomed Opt. 2023 Mar;28(3):036006. doi: 10.1117/1.JBO.28.3.036006. Epub 2023 Mar 13.
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Reduction in required volume of imaging data and image reconstruction time for adaptive-illumination Fourier ptychographic microscopy.自适应照明傅里叶叠层显微术所需成像数据量及图像重建时间的减少
J Biophotonics. 2023 Mar;16(3):e202200240. doi: 10.1002/jbio.202200240. Epub 2022 Nov 14.
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Deep Multi-Feature Transfer Network for Fourier Ptychographic Microscopy Imaging Reconstruction.用于傅里叶叠层显微成像重建的深度多特征传输网络。
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Fourier ptychographic microscopy reconstruction with multiscale deep residual network.基于多尺度深度残差网络的傅里叶叠层显微镜重建
Opt Express. 2019 Mar 18;27(6):8612-8625. doi: 10.1364/OE.27.008612.
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System calibration method for Fourier ptychographic microscopy.傅里叶叠层显微镜的系统校准方法
J Biomed Opt. 2017 Sep;22(9):1-11. doi: 10.1117/1.JBO.22.9.096005.
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Nonlinear optimization approach for Fourier ptychographic microscopy.用于傅里叶叠层显微镜的非线性优化方法。
Opt Express. 2015 Dec 28;23(26):33822-35. doi: 10.1364/OE.23.033822.
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Forward imaging neural network with correction of positional misalignment for Fourier ptychographic microscopy.用于傅里叶叠层显微镜的具有位置失准校正功能的前向成像神经网络。
Opt Express. 2020 Aug 3;28(16):23164-23175. doi: 10.1364/OE.398951.

引用本文的文献

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Fourier Ptychographic Microscopy Reconstruction Method Based on Residual Local Mixture Network.基于残差局部混合网络的傅里叶叠层显微镜重建方法
Sensors (Basel). 2024 Jun 24;24(13):4099. doi: 10.3390/s24134099.
2
Fourier Ptychographic Neural Network Combined with Zernike Aberration Recovery and Wirtinger Flow Optimization.结合泽尼克像差恢复和维特林格流优化的傅里叶叠层摄影神经网络
Sensors (Basel). 2024 Feb 23;24(5):1448. doi: 10.3390/s24051448.
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Fourier Ptychographic Microscopy 10 Years on: A Review.傅里叶叠层显微术 10 年进展综述
Cells. 2024 Feb 10;13(4):324. doi: 10.3390/cells13040324.
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Fourier Ptychographic Microscopic Reconstruction Method Based on Residual Hybrid Attention Network.基于残差混合注意力网络的傅里叶叠层显微重建方法
Sensors (Basel). 2023 Aug 21;23(16):7301. doi: 10.3390/s23167301.