School of Molecular Sciences and Center for Molecular Design and Biomimetics, The Biodesign Institute, Arizona State University, 1001 South McAllister Avenue, Tempe, AZ 85281, USA.
Wyss Institute, Harvard University, Boston, MA 02115, USA.
Nucleic Acids Res. 2022 Jan 7;50(D1):D246-D252. doi: 10.1093/nar/gkab1000.
We introduce a new online database of nucleic acid nanostructures for the field of DNA and RNA nanotechnology. The database implements an upload interface, searching and database browsing. Each deposited nanostructures includes an image of the nanostructure, design file, an optional 3D view, and additional metadata such as experimental data, protocol or literature reference. The database accepts nanostructures in any preferred format used by the uploader for the nanostructure design. We further provide a set of conversion tools that encourage design file conversion into common formats (oxDNA and PDB) that can be used for setting up simulations, interactive editing or 3D visualization. The aim of the repository is to provide to the DNA/RNA nanotechnology community a resource for sharing their designs for further reuse in other systems and also to function as an archive of the designs that have been achieved in the field so far. Nanobase.org is available at https://nanobase.org/.
我们介绍了一个新的在线核酸纳米结构数据库，用于 DNA 和 RNA 纳米技术领域。该数据库实现了上传接口、搜索和数据库浏览功能。每个存储的纳米结构都包括纳米结构的图像、设计文件、可选的 3D 视图以及其他元数据，如实验数据、方案或文献参考。该数据库接受上传者用于纳米结构设计的任何首选格式的纳米结构。我们还提供了一组转换工具，鼓励将设计文件转换为常用格式（oxDNA 和 PDB），可用于设置模拟、交互式编辑或 3D 可视化。该存储库的目的是为 DNA/RNA 纳米技术社区提供一个资源，用于共享他们的设计，以便在其他系统中进一步重用，并作为迄今为止该领域已实现的设计的档案。Nanobase.org 可在 https://nanobase.org/ 上获得。
