• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

金属酶中的功能与保护性空穴跳跃

Functional and protective hole hopping in metalloenzymes.

作者信息

Gray Harry B, Winkler Jay R

机构信息

Beckman Institute, California Institute of Technology 1200 E California Boulevard Pasadena CA 19925 USA

出版信息

Chem Sci. 2021 Sep 27;12(42):13988-14003. doi: 10.1039/d1sc04286f. eCollection 2021 Nov 3.

DOI:10.1039/d1sc04286f
PMID:34760183
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8565380/
Abstract

Electrons can tunnel through proteins in microseconds with a modest release of free energy over distances in the 15 to 20 Å range. To span greater distances, or to move faster, multiple charge transfers (hops) are required. When one of the reactants is a strong oxidant, it is convenient to consider the movement of a positively charged "hole" in a direction opposite to that of the electron. Hole hopping along chains of tryptophan (Trp) and tyrosine (Tyr) residues is a critical function in several metalloenzymes that generate high-potential intermediates by reactions with O or HO, or by activation with visible light. Examination of the protein structural database revealed that Tyr/Trp chains are common protein structural elements, particularly among enzymes that react with O and HO. In many cases these chains may serve a protective role in metalloenzymes by deactivating high-potential reactive intermediates formed in uncoupled catalytic turnover.

摘要

电子能够在微秒内穿过蛋白质,在15至20埃的距离上适度释放自由能。为了跨越更大的距离或更快地移动,则需要多次电荷转移(跳跃)。当其中一种反应物是强氧化剂时,考虑带正电的“空穴”在与电子相反的方向上移动会很方便。沿着色氨酸(Trp)和酪氨酸(Tyr)残基链的空穴跳跃是几种金属酶中的关键功能,这些金属酶通过与O或HO反应,或通过可见光激活来生成高电位中间体。对蛋白质结构数据库的研究表明,Tyr/Trp链是常见的蛋白质结构元件,特别是在与O和HO反应的酶中。在许多情况下,这些链可能通过使在非耦合催化周转中形成的高电位反应中间体失活,在金属酶中起到保护作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/0b47fab47241/d1sc04286f-f9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/aa95038b919d/d1sc04286f-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/b8e3bb4450cd/d1sc04286f-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/23f6bc9228fb/d1sc04286f-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/cc8fa3913bdf/d1sc04286f-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/cb1ab5ea0c0b/d1sc04286f-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/eb69dadbbce6/d1sc04286f-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/51b67b69d946/d1sc04286f-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/9062e4fbd53f/d1sc04286f-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/0b47fab47241/d1sc04286f-f9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/aa95038b919d/d1sc04286f-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/b8e3bb4450cd/d1sc04286f-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/23f6bc9228fb/d1sc04286f-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/cc8fa3913bdf/d1sc04286f-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/cb1ab5ea0c0b/d1sc04286f-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/eb69dadbbce6/d1sc04286f-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/51b67b69d946/d1sc04286f-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/9062e4fbd53f/d1sc04286f-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/790e/8565380/0b47fab47241/d1sc04286f-f9.jpg

相似文献

1
Functional and protective hole hopping in metalloenzymes.金属酶中的功能与保护性空穴跳跃
Chem Sci. 2021 Sep 27;12(42):13988-14003. doi: 10.1039/d1sc04286f. eCollection 2021 Nov 3.
2
Electron flow through biological molecules: does hole hopping protect proteins from oxidative damage?电子在生物分子中的流动:空穴跳跃能否保护蛋白质免受氧化损伤?
Q Rev Biophys. 2015 Nov;48(4):411-20. doi: 10.1017/S0033583515000062.
3
Hole hopping through tyrosine/tryptophan chains protects proteins from oxidative damage.通过酪氨酸/色氨酸链进行的空穴跳跃可保护蛋白质免受氧化损伤。
Proc Natl Acad Sci U S A. 2015 Sep 1;112(35):10920-5. doi: 10.1073/pnas.1512704112. Epub 2015 Jul 20.
4
Could tyrosine and tryptophan serve multiple roles in biological redox processes?酪氨酸和色氨酸能否在生物氧化还原过程中发挥多种作用?
Philos Trans A Math Phys Eng Sci. 2015 Mar 13;373(2037). doi: 10.1098/rsta.2014.0178.
5
Living with Oxygen.吸氧生活。
Acc Chem Res. 2018 Aug 21;51(8):1850-1857. doi: 10.1021/acs.accounts.8b00245. Epub 2018 Jul 17.
6
LC-MS/MS Proteoform Profiling Exposes Cytochrome c Peroxidase Self-Oxidation in Mitochondria and Functionally Important Hole Hopping from Its Heme.LC-MS/MS 蛋白组学分析揭示了线粒体细胞色素 c 过氧化物酶的自身氧化,以及其血红素上功能重要的空穴跳跃。
J Am Chem Soc. 2018 Sep 26;140(38):12033-12039. doi: 10.1021/jacs.8b05966. Epub 2018 Sep 12.
7
Hole Hopping through Cytochrome P450.细胞色素P450中的电子跳跃
J Phys Chem B. 2020 Apr 16;124(15):3065-3073. doi: 10.1021/acs.jpcb.9b09414. Epub 2020 Apr 6.
8
The Rise of Radicals in Bioinorganic Chemistry.生物无机化学中自由基的兴起
Isr J Chem. 2016 Oct;56(9-10):640-648. doi: 10.1002/ijch.201600069. Epub 2016 Jul 29.
9
Flash photolysis of cutinase: identification and decay kinetics of transient intermediates formed upon UV excitation of aromatic residues.角质酶的闪光光解:芳香族残基紫外线激发后形成的瞬态中间体的鉴定与衰减动力学
Biophys J. 2009 Jul 8;97(1):211-26. doi: 10.1016/j.bpj.2009.01.065.
10
Proton-regulated electron transfers from tyrosine to tryptophan in proteins: through-bond mechanism versus long-range hopping mechanism.蛋白质中酪氨酸到色氨酸的质子调控电子转移:键间机制与远程跳跃机制。
J Phys Chem B. 2009 Dec 31;113(52):16681-8. doi: 10.1021/jp9077689.

引用本文的文献

1
Structure-Function Analysis of an Understudied Type of LPMO with Unique Redox Properties and Substrate Specificity.对一种研究较少的具有独特氧化还原特性和底物特异性的LPMO类型的结构-功能分析。
ACS Catal. 2025 Jun 6;15(12):10601-10617. doi: 10.1021/acscatal.5c03003. eCollection 2025 Jun 20.
2
Flavodiiron proteins in Physcomitrium patens: navigating the edge between photoprotection and efficiency.小立碗藓中的黄素二铁蛋白:在光保护与效率之间探寻平衡
Plant J. 2025 Feb;121(4):e70052. doi: 10.1111/tpj.70052.
3
Electron transfer in polysaccharide monooxygenase catalysis.

本文引用的文献

1
When anaerobes encounter oxygen: mechanisms of oxygen toxicity, tolerance and defence.当厌氧菌遇到氧气时:氧气毒性、耐受性和防御机制。
Nat Rev Microbiol. 2021 Dec;19(12):774-785. doi: 10.1038/s41579-021-00583-y. Epub 2021 Jun 28.
2
3D Interaction Homology: Hydropathic Analyses of the "π-Cation" and "π-π" Interaction Motifs in Phenylalanine, Tyrosine, and Tryptophan Residues.3D 相互作用同源性:苯丙氨酸、酪氨酸和色氨酸残基中“π-阳离子”和“π-π”相互作用基序的疏水性分析。
J Chem Inf Model. 2021 Jun 28;61(6):2937-2956. doi: 10.1021/acs.jcim.1c00235. Epub 2021 Jun 8.
3
DyP-Type Peroxidases: Recent Advances and Perspectives.
多糖单加氧酶催化中的电子转移
Proc Natl Acad Sci U S A. 2025 Jan 7;122(1):e2411229121. doi: 10.1073/pnas.2411229121. Epub 2024 Dec 30.
4
On the Non-Catalytic Role of Lytic Polysaccharide Monooxygenases in Boosting the Action of PETases on PET Polymers.关于裂解多糖单加氧酶在增强PET酶对PET聚合物作用中的非催化作用
ChemSusChem. 2025 Feb 16;18(4):e202401350. doi: 10.1002/cssc.202401350. Epub 2024 Nov 14.
5
Mutational dissection of a hole hopping route in a lytic polysaccharide monooxygenase (LPMO).溶菌多糖单加氧酶(LPMO)中孔跳跃途径的突变分析。
Nat Commun. 2024 May 10;15(1):3975. doi: 10.1038/s41467-024-48245-w.
6
Unveiling the role of inorganic nanoparticles in Earth's biochemical evolution through electron transfer dynamics.通过电子转移动力学揭示无机纳米颗粒在地球生化演化中的作用。
iScience. 2024 Mar 25;27(5):109555. doi: 10.1016/j.isci.2024.109555. eCollection 2024 May 17.
7
Inorganic Fe-O and Fe-S oxidoreductases: paradigms for prebiotic chemistry and the evolution of enzymatic activity in biology.无机铁 - 氧和铁 - 硫氧化还原酶:前生物化学及生物中酶活性进化的范例
Front Chem. 2024 Feb 8;12:1349020. doi: 10.3389/fchem.2024.1349020. eCollection 2024.
8
Understanding the initial events of the oxidative damage and protection mechanisms of the AA9 lytic polysaccharide monooxygenase family.了解AA9裂解多糖单加氧酶家族氧化损伤的初始事件及保护机制。
Chem Sci. 2024 Jan 9;15(7):2558-2570. doi: 10.1039/d3sc05933b. eCollection 2024 Feb 14.
9
Tryptophan to Tryptophan Hole Hopping in an Azurin Construct.色氨酸到色氨酸空穴跃迁在蓝铜蛋白构建体中。
J Phys Chem B. 2024 Jan 11;128(1):96-108. doi: 10.1021/acs.jpcb.3c06568. Epub 2023 Dec 25.
10
Tryptophan extends the life of cytochrome P450.色氨酸延长细胞色素 P450 的寿命。
Proc Natl Acad Sci U S A. 2023 Dec 12;120(50):e2317372120. doi: 10.1073/pnas.2317372120. Epub 2023 Dec 7.
DyP 型过氧化物酶:最新进展与展望。
Int J Mol Sci. 2021 May 24;22(11):5556. doi: 10.3390/ijms22115556.
4
Detection of Water Molecules on the Radical Transfer Pathway of Ribonucleotide Reductase by O Electron-Nuclear Double Resonance Spectroscopy.O 电子-核双共振光谱法检测核苷酸还原酶自由基转移途径上的水分子。
J Am Chem Soc. 2021 May 19;143(19):7237-7241. doi: 10.1021/jacs.1c01359. Epub 2021 May 6.
5
On the Track of Long-Range Electron Transfer in B-Type Dye-Decolorizing Peroxidases: Identification of a Tyrosyl Radical by Computational Prediction and Electron Paramagnetic Resonance Spectroscopy.追踪 B 型染料脱色过氧化物酶中的长程电子转移:通过计算预测和电子顺磁共振波谱学鉴定酪氨酸自由基。
Biochemistry. 2021 Apr 20;60(15):1226-1241. doi: 10.1021/acs.biochem.1c00129. Epub 2021 Mar 30.
6
The number of catalytic cycles in an enzyme's lifetime and why it matters to metabolic engineering.酶的寿命中的催化循环数及其对代谢工程的意义。
Proc Natl Acad Sci U S A. 2021 Mar 30;118(13). doi: 10.1073/pnas.2023348118.
7
Gated Proton Release during Radical Transfer at the Subunit Interface of Ribonucleotide Reductase.核孔复合体转运在核糖核苷酸还原酶亚基界面的自由基转移过程中引发的质子释放。
J Am Chem Soc. 2021 Jan 13;143(1):176-183. doi: 10.1021/jacs.0c07879. Epub 2020 Dec 23.
8
Redox Biochemistry of the Genetic Code.遗传密码的氧化还原生物化学。
Trends Biochem Sci. 2021 Feb;46(2):83-86. doi: 10.1016/j.tibs.2020.10.008. Epub 2020 Nov 27.
9
Role of a Tyrosine Radical in Human Ceruloplasmin Catalysis.酪氨酸自由基在人铜蓝蛋白催化中的作用
ACS Cent Sci. 2020 Oct 28;6(10):1835-1843. doi: 10.1021/acscentsci.0c00953. Epub 2020 Sep 2.
10
Ribonucleotide Reductases: Structure, Chemistry, and Metabolism Suggest New Therapeutic Targets.核苷酸还原酶:结构、化学和代谢提示新的治疗靶点。
Annu Rev Biochem. 2020 Jun 20;89:45-75. doi: 10.1146/annurev-biochem-013118-111843.