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核孔复合体转运在核糖核苷酸还原酶亚基界面的自由基转移过程中引发的质子释放。

Gated Proton Release during Radical Transfer at the Subunit Interface of Ribonucleotide Reductase.

机构信息

Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States.

Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States.

出版信息

J Am Chem Soc. 2021 Jan 13;143(1):176-183. doi: 10.1021/jacs.0c07879. Epub 2020 Dec 23.

Abstract

The class Ia ribonucleotide reductase of requires strict regulation of long-range radical transfer between two subunits, α and β, through a series of redox-active amino acids (Y•[β] ↔ W?[β] ↔ Y[β] ↔ Y[α] ↔ Y[α] ↔ C[α]). Nowhere is this more precarious than at the subunit interface. Here, we show that the oxidation of Y is regulated by proton release involving a specific residue, E[β], which is part of a water channel at the subunit interface for rapid proton transfer to the bulk solvent. An EQ variant is incapable of Y oxidation via the native radical transfer pathway or non-native photochemical oxidation, following photosensitization by covalent attachment of a photo-oxidant at position 355[β]. Substitution of Y for various FY analogues in an EQ-photoβ, where the side chain remains deprotonated, recovered photochemical enzymatic turnover. Transient absorption and emission data support the conclusion that Y oxidation requires E for proton management, suggesting its essential role in gating radical transport across the protein-protein interface.

摘要

需要严格调控 Ia 核糖核苷酸还原酶的长程自由基转移,这是通过一系列氧化还原活性氨基酸(Y•[β]↔W?[β]↔Y[β]↔Y[α]↔Y[α]↔C[α])实现的。在亚基界面,这种调控更为关键。本文表明,E[β](位于亚基界面水通道的一部分)参与质子释放,调控 Y 的氧化,可实现快速质子向溶剂转移。EQ 变体无法通过天然自由基转移途径或非天然光化学氧化进行 Y 氧化,这是因为在 355[β]位置共价连接光氧化剂进行光敏化后,其不能进行天然的光化学氧化。在 EQ-photoβ中,用各种 FY 类似物取代 Y,其中侧链保持去质子化,恢复了光化学酶促周转。瞬态吸收和发射数据支持 Y 氧化需要 E 进行质子管理的结论,表明其在门控蛋白-蛋白界面的自由基传输中具有重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b336/7904477/da84ba12b3c1/nihms-1663977-f0002.jpg

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