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低温下的CCA添加:来自永冻土细菌的嗜冷CCA添加酶的结构表征

CCA-addition in the cold: Structural characterization of the psychrophilic CCA-adding enzyme from the permafrost bacterium .

作者信息

de Wijn Raphaël, Rollet Kévin, Ernst Felix G M, Wellner Karolin, Betat Heike, Mörl Mario, Sauter Claude

机构信息

Architecture et Réactivité de l'ARN, Université de Strasbourg, CNRS, IBMC, 67084 Strasbourg, France.

Institute for Biochemistry, Leipzig University, Brüderstr. 34, 04103 Leipzig, Germany.

出版信息

Comput Struct Biotechnol J. 2021 Oct 21;19:5845-5855. doi: 10.1016/j.csbj.2021.10.018. eCollection 2021.

Abstract

CCA-adding enzymes are highly specific RNA polymerases that add and maintain the sequence C-C-A at tRNA 3'-ends. Recently, we could reveal that cold adaptation of such a polymerase is not only achieved at the expense of enzyme stability, but also at the cost of polymerization fidelity. Enzymes from psychrophilic organisms usually show an increased structural flexibility to enable catalysis at low temperatures. Here, polymerases face a dilemma, as there is a discrepancy between the need for a tightly controlled flexibility during polymerization and an increased flexibility as strategy for cold adaptation. Based on structural and biochemical analyses, we contribute to clarify the cold adaptation strategy of the psychrophilic CCA-adding enzyme from , a gram-positive bacterium thriving in the arctic permafrost at low temperatures down to -15 °C. A comparison with the closely related enzyme from the thermophilic bacterium reveals several features of cold adaptation - a significantly reduced amount of alpha-helical elements in the C-terminal tRNA-binding region and a structural adaptation in one of the highly conserved catalytic core motifs located in the N-terminal catalytic core of the enzyme.

摘要

CCA添加酶是高度特异性的RNA聚合酶,可在tRNA 3'末端添加并维持C-C-A序列。最近,我们发现这种聚合酶的冷适应性不仅是以酶稳定性为代价实现的,而且还以聚合保真度为代价。嗜冷生物的酶通常表现出增加的结构灵活性,以在低温下进行催化。在这里,聚合酶面临一个困境,因为在聚合过程中对严格控制的灵活性的需求与作为冷适应策略的增加的灵活性之间存在差异。基于结构和生化分析,我们有助于阐明来自[细菌名称]的嗜冷CCA添加酶的冷适应策略,[细菌名称]是一种革兰氏阳性细菌,在低至-15°C的北极永久冻土中低温生长。与来自嗜热细菌[细菌名称]的密切相关酶的比较揭示了冷适应的几个特征——C末端tRNA结合区域中α-螺旋元件的数量显著减少,以及位于酶N末端催化核心的高度保守催化核心基序之一的结构适应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b449/8563995/5ba52365da59/ga1.jpg

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