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转录组水平上基因表达对放牧强度差异的响应。

Transcriptome-Wide Gene Expression Plasticity in in Response to Grazing Intensity Differences.

机构信息

Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau & Inner Mongolia Key Laboratory of Grassland Ecology, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China.

Ministry of Education Key Laboratory of Herbage & Endemic Crop Biotechnology, School of Life Sciences, Inner Mongolia University, Hohhot 010021, China.

出版信息

Int J Mol Sci. 2021 Nov 2;22(21):11882. doi: 10.3390/ijms222111882.

Abstract

Organisms have evolved effective and distinct adaptive strategies to survive. is a representative species for studying the grazing effect on typical steppe plants in the Inner Mongolia Plateau. Although phenotypic (morphological and physiological) variations in in response to long-term grazing have been identified, the molecular mechanisms underlying adaptations and plastic responses remain largely unknown. Here, we performed a transcriptomic analysis to investigate changes in gene expression of under four different grazing intensities. As a result, a total of 2357 differentially expressed genes (DEGs) were identified among the tested grazing intensities, suggesting long-term grazing resulted in gene expression plasticity that affected diverse biological processes and metabolic pathways in . DEGs were identified in RNA-Seq and qRT-PCR analyses that indicated the modulation of the Calvin-Benson cycle and photorespiration metabolic pathways. The key gene expression profiles encoding various proteins (e.g., ribulose-1,5-bisphosphate carboxylase/oxygenase, fructose-1,6-bisphosphate aldolase, glycolate oxidase, etc.) involved in these pathways suggest that they may synergistically respond to grazing to increase the resilience and stress tolerance of . Our findings provide scientific clues for improving grassland use and protection and identifying important questions to address in future transcriptome studies.

摘要

生物已经进化出有效而独特的适应策略来生存。 是研究内蒙古高原典型草原植物放牧效应的代表性物种。虽然已经确定了 对长期放牧的表型(形态和生理)变化,但适应和可塑性反应的分子机制在很大程度上仍然未知。在这里,我们进行了转录组分析,以研究四种不同放牧强度下 的基因表达变化。结果,在测试的放牧强度中,共鉴定出 2357 个差异表达基因(DEGs),表明长期放牧导致基因表达可塑性,影响了 的多种生物学过程和代谢途径。在 RNA-Seq 和 qRT-PCR 分析中鉴定出 DEGs,表明卡尔文-本森循环和光呼吸代谢途径的调节。编码各种蛋白质(如核酮糖-1,5-二磷酸羧化酶/加氧酶、果糖-1,6-二磷酸醛缩酶、乙醛酸氧化酶等)的关键基因表达谱表明,它们可能协同响应放牧,以提高 的弹性和抗应激能力。我们的研究结果为提高草地利用和保护提供了科学线索,并确定了未来转录组研究中需要解决的重要问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cc/8611654/86dbf788c1b3/ijms-22-11882-g001.jpg

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