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NP-MRD:天然产物磁共振数据库。

NP-MRD: the Natural Products Magnetic Resonance Database.

机构信息

Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.

Department of Computing Science, University of Alberta, Edmonton, AB T6G 2E8, Canada.

出版信息

Nucleic Acids Res. 2022 Jan 7;50(D1):D665-D677. doi: 10.1093/nar/gkab1052.

Abstract

The Natural Products Magnetic Resonance Database (NP-MRD) is a comprehensive, freely available electronic resource for the deposition, distribution, searching and retrieval of nuclear magnetic resonance (NMR) data on natural products, metabolites and other biologically derived chemicals. NMR spectroscopy has long been viewed as the 'gold standard' for the structure determination of novel natural products and novel metabolites. NMR is also widely used in natural product dereplication and the characterization of biofluid mixtures (metabolomics). All of these NMR applications require large collections of high quality, well-annotated, referential NMR spectra of pure compounds. Unfortunately, referential NMR spectral collections for natural products are quite limited. It is because of the critical need for dedicated, open access natural product NMR resources that the NP-MRD was funded by the National Institute of Health (NIH). Since its launch in 2020, the NP-MRD has grown quickly to become the world's largest repository for NMR data on natural products and other biological substances. It currently contains both structural and NMR data for nearly 41,000 natural product compounds from >7400 different living species. All structural, spectroscopic and descriptive data in the NP-MRD is interactively viewable, searchable and fully downloadable in multiple formats. Extensive hyperlinks to other databases of relevance are also provided. The NP-MRD also supports community deposition of NMR assignments and NMR spectra (1D and 2D) of natural products and related meta-data. The deposition system performs extensive data enrichment, automated data format conversion and spectral/assignment evaluation. Details of these database features, how they are implemented and plans for future upgrades are also provided. The NP-MRD is available at https://np-mrd.org.

摘要

天然产物磁共振数据库(NP-MRD)是一个全面的、免费提供的电子资源,用于天然产物、代谢物和其他生物衍生化学物质的核磁共振(NMR)数据的存储、分布、搜索和检索。NMR 光谱长期以来一直被视为新型天然产物和新型代谢物结构测定的“金标准”。NMR 还广泛用于天然产物去重复和生物流体混合物(代谢组学)的特征描述。所有这些 NMR 应用都需要大量高质量、注释良好、参考性的纯化合物 NMR 光谱。不幸的是,天然产物的参考 NMR 光谱集合相当有限。正是由于对专用、开放获取的天然产物 NMR 资源的迫切需求,NP-MRD 才得到了美国国立卫生研究院(NIH)的资助。自 2020 年推出以来,NP-MRD 迅速发展成为世界上最大的天然产物和其他生物物质 NMR 数据存储库。它目前包含来自 7400 多种不同生物的近 41000 种天然产物化合物的结构和 NMR 数据。NP-MRD 中的所有结构、光谱和描述性数据都可以以多种格式进行交互式查看、搜索和完全下载。还提供了与其他相关数据库的广泛超链接。NP-MRD 还支持 NMR 分配和 NMR 光谱(1D 和 2D)的社区存储,包括天然产物和相关元数据。存储系统执行广泛的数据丰富、自动数据格式转换和光谱/分配评估。还提供了这些数据库功能的详细信息、实现方式以及未来升级计划。NP-MRD 可在 https://np-mrd.org 上获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6882/8728158/96ef58e3b534/gkab1052fig1.jpg

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