Department of Evolution, Ecology and Behaviour, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.
Antibiotic Resistance Evolution Group, Max Planck Institute for Evolutionary Biology, Plön, Germany.
Philos Trans R Soc Lond B Biol Sci. 2022 Jan 17;377(1842):20200472. doi: 10.1098/rstb.2020.0472. Epub 2021 Nov 29.
Naturally occurring plasmids come in different sizes. The smallest are less than a kilobase of DNA, while the largest can be over three orders of magnitude larger. Historically, research has tended to focus on smaller plasmids that are usually easier to isolate, manipulate and sequence, but with improved genome assemblies made possible by long-read sequencing, there is increased appreciation that very large plasmids-known as megaplasmids-are widespread, diverse, complex, and often encode key traits in the biology of their host microorganisms. Why are megaplasmids so big? What other features come with large plasmid size that could affect bacterial ecology and evolution? Are megaplasmids 'just' big plasmids, or do they have distinct characteristics? In this perspective, we reflect on the distribution, diversity, biology, and gene content of megaplasmids, providing an overview to these large, yet often overlooked, mobile genetic elements. This article is part of the theme issue 'The secret lives of microbial mobile genetic elements'.
天然存在的质粒有不同的大小。最小的不到 1 千碱基对,而最大的可以超过三个数量级。从历史上看,研究往往集中在较小的质粒上,因为这些质粒通常更容易分离、操作和测序,但随着长读测序使得基因组组装得到改善,人们越来越认识到非常大的质粒(称为巨型质粒)广泛存在、多样、复杂,并且通常编码其宿主微生物生物学中的关键特征。为什么巨型质粒这么大?大型质粒大小带来的其他特征会影响细菌的生态和进化吗?巨型质粒仅仅是大质粒,还是它们具有独特的特征?在这篇观点文章中,我们反思了巨型质粒的分布、多样性、生物学和基因组成,概述了这些大型但常常被忽视的可移动遗传元件。本文是主题为“微生物可移动遗传元件的秘密生活”的一部分。