Department of Biotechnology, Institute of Graduate Studies and Research, Alexandria University, Alexandria, Egypt.
School of Biosciences, Molecular Biosciences Division, Cardiff University, Cardiff CF10 3AX, UK.
Open Biol. 2021 Dec;11(12):210182. doi: 10.1098/rsob.210182. Epub 2021 Dec 1.
Here we determined the structure of a cold active family IV esterase (EstN7) cloned strain N1. EstN7 is a dimer with a classical α/β hydrolase fold. It has an acidic surface that is thought to play a role in cold-adaption by retaining solvation under changed water solvent entropy at lower temperatures. The conformation of the functionally important cap region is significantly different to EstN7's closest relatives, forming a bridge-like structure with reduced helical content providing greater access to the active site through more than one substrate access tunnel. However, dynamics do not appear to play a major role in cold adaption. Molecular dynamics at different temperatures, rigidity analysis, normal mode analysis and geometric simulations of motion confirm the flexibility of the cap region but suggest that the rest of the protein is largely rigid. Rigidity analysis indicates the distribution of hydrophobic tethers is appropriate to colder conditions, where the hydrophobic effect is weaker than in mesophilic conditions due to reduced water entropy. Thus, it is likely that increased substrate accessibility and tolerance to changes in water entropy are important for of EstN7's cold adaptation rather than changes in dynamics.
在这里,我们确定了冷活性家族 IV 酯酶(EstN7)克隆菌株 N1 的结构。EstN7 是一个具有经典α/β水解酶折叠的二聚体。它具有酸性表面,据认为通过在较低温度下保持变化的水溶剂熵下的溶剂化作用,在低温下对冷适应起到作用。功能重要的帽区的构象与 EstN7 最接近的亲属明显不同,形成桥状结构,螺旋含量降低,通过多个底物进入隧道提供更多进入活性位点的途径。然而,动力学似乎在冷适应中不起主要作用。不同温度下的分子动力学、刚性分析、正则模态分析和运动的几何模拟证实了帽区的灵活性,但表明其余蛋白质大部分是刚性的。刚性分析表明,疏水连接的分布适合较冷的条件,由于水熵减少,疏水性在较冷条件下比在嗜温条件下弱。因此,增加底物的可及性和对水熵变化的容忍度可能对 EstN7 的冷适应很重要,而不是动力学的变化。