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定向进化翻译系统以实现高效非天然氨基酸掺入和通用合成营养缺陷型构建。

Directed-evolution of translation system for efficient unnatural amino acids incorporation and generalizable synthetic auxotroph construction.

机构信息

Zhejiang Provincial Key Laboratory for Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University, Hangzhou, 310058, China.

Department of Medical Oncology, The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310058, China.

出版信息

Nat Commun. 2021 Dec 2;12(1):7039. doi: 10.1038/s41467-021-27399-x.

DOI:10.1038/s41467-021-27399-x
PMID:34857769
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8639764/
Abstract

Site-specific incorporation of unnatural amino acids (UAAs) with similar incorporation efficiency to that of natural amino acids (NAAs) and low background activity is extremely valuable for efficient synthesis of proteins with diverse new chemical functions and design of various synthetic auxotrophs. However, such efficient translation systems remain largely unknown in the literature. Here, we describe engineered chimeric phenylalanine systems that dramatically increase the yield of proteins bearing UAAs, through systematic engineering of the aminoacyl-tRNA synthetase and its respective cognate tRNA. These engineered synthetase/tRNA pairs allow single-site and multi-site incorporation of UAAs with efficiencies similar to those of NAAs and high fidelity. In addition, using the evolved chimeric phenylalanine system, we construct a series of E. coli strains whose growth is strictly dependent on exogenously supplied of UAAs. We further show that synthetic auxotrophic cells can grow robustly in living mice when UAAs are supplemented.

摘要

定点整合非天然氨基酸(UAAs)具有类似于天然氨基酸(NAAs)的整合效率和低背景活性,对于高效合成具有各种新化学功能的蛋白质和设计各种合成营养缺陷型非常有价值。然而,在文献中,这样高效的翻译系统仍然在很大程度上未知。在这里,我们描述了经过工程改造的嵌合苯丙氨酸系统,通过对氨酰-tRNA 合成酶及其相应的 tRNA 进行系统工程改造,极大地提高了携带 UAA 的蛋白质的产量。这些经过工程改造的合成酶/tRNA 对允许 UAA 的单点和多点掺入,效率与 NAA 相似,且具有高保真度。此外,使用进化的嵌合苯丙氨酸系统,我们构建了一系列严格依赖外源性供应 UAA 的大肠杆菌菌株。我们进一步表明,当补充 UAA 时,合成营养缺陷型细胞可以在活体小鼠中稳健生长。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/8512d04b595d/41467_2021_27399_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/cf527f47a478/41467_2021_27399_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/ee06eb1ebd6d/41467_2021_27399_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/8870ea533f42/41467_2021_27399_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/28c47dd6b9a6/41467_2021_27399_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/4a31d4d44714/41467_2021_27399_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/8512d04b595d/41467_2021_27399_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/cf527f47a478/41467_2021_27399_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/ee06eb1ebd6d/41467_2021_27399_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/8870ea533f42/41467_2021_27399_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/28c47dd6b9a6/41467_2021_27399_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/4a31d4d44714/41467_2021_27399_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9182/8639764/8512d04b595d/41467_2021_27399_Fig6_HTML.jpg

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Nat Rev Genet. 2021 Mar;22(3):169-184. doi: 10.1038/s41576-020-00307-7. Epub 2020 Dec 14.
2
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Nat Commun. 2020 Oct 8;11(1):5078. doi: 10.1038/s41467-020-18960-1.
3
Increasing the chemical space of proteins in living cells via genetic code expansion.通过遗传密码扩展增加活细胞中蛋白质的化学空间。
计算辅助的非规范氨基酸掺入
ACS Cent Sci. 2024 Dec 16;11(1):84-90. doi: 10.1021/acscentsci.4c01544. eCollection 2025 Jan 22.
4
Genetic Code Expansion: Recent Developments and Emerging Applications.遗传密码扩展:最新进展与新兴应用
Chem Rev. 2025 Jan 22;125(2):523-598. doi: 10.1021/acs.chemrev.4c00216. Epub 2024 Dec 31.
5
Engineering Phages to Fight Multidrug-Resistant Bacteria.改造噬菌体以对抗多重耐药细菌。
Chem Rev. 2025 Jan 22;125(2):933-971. doi: 10.1021/acs.chemrev.4c00681. Epub 2024 Dec 16.
6
Genetic Code Expansion Approaches to Decipher the Ubiquitin Code.遗传密码扩展方法解析泛素密码。
Chem Rev. 2024 Oct 23;124(20):11544-11584. doi: 10.1021/acs.chemrev.4c00375. Epub 2024 Sep 23.
7
Harnessing Nature-Inspired Catechol Amino Acid to Engineer Sticky Proteins and Bacteria.利用受自然启发的儿茶酚氨基酸设计粘性蛋白质和细菌。
Small Methods. 2024 Dec;8(12):e2400230. doi: 10.1002/smtd.202400230. Epub 2024 Sep 17.
8
Engineering Pyrrolysine Systems for Genetic Code Expansion and Reprogramming.工程吡咯赖氨酸系统用于遗传密码扩展和重编程。
Chem Rev. 2024 Oct 9;124(19):11008-11062. doi: 10.1021/acs.chemrev.4c00243. Epub 2024 Sep 5.
9
Engineered Proteins and Materials Utilizing Residue-Specific Noncanonical Amino Acid Incorporation.利用残基特异性非天然氨基酸掺入工程化蛋白质和材料。
Chem Rev. 2024 Aug 14;124(15):9113-9135. doi: 10.1021/acs.chemrev.3c00855. Epub 2024 Jul 15.
10
Tuning tRNAs for improved translation.优化转运RNA以改善翻译过程。
Front Genet. 2024 Jun 25;15:1436860. doi: 10.3389/fgene.2024.1436860. eCollection 2024.
Curr Opin Chem Biol. 2020 Oct;58:112-120. doi: 10.1016/j.cbpa.2020.07.012. Epub 2020 Sep 7.
4
Chimeric design of pyrrolysyl-tRNA synthetase/tRNA pairs and canonical synthetase/tRNA pairs for genetic code expansion.用于遗传密码扩展的吡咯赖氨酸-tRNA 合成酶/tRNA 对和典型合成酶/tRNA 对的嵌合设计。
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5
Engineered triply orthogonal pyrrolysyl-tRNA synthetase/tRNA pairs enable the genetic encoding of three distinct non-canonical amino acids.工程化的三重正交吡咯赖氨酸-tRNA 合成酶/tRNA 对可实现三种不同的非天然氨基酸的遗传编码。
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6
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Mol Cell. 2020 May 21;78(4):614-623. doi: 10.1016/j.molcel.2020.03.034.
7
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J Am Chem Soc. 2019 Oct 16;141(41):16213-16216. doi: 10.1021/jacs.9b08491. Epub 2019 Oct 4.
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9
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Nat Chem Biol. 2019 Mar;15(3):276-284. doi: 10.1038/s41589-019-0227-4. Epub 2019 Feb 15.
10
De novo design of potent and selective mimics of IL-2 and IL-15.从头设计强效且高选择性的 IL-2 和 IL-15 模拟物。
Nature. 2019 Jan;565(7738):186-191. doi: 10.1038/s41586-018-0830-7. Epub 2019 Jan 9.