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在冷冻电镜中对理想样本厚度进行基准测试。

Benchmarking the ideal sample thickness in cryo-EM.

机构信息

HHMI, University of California, Los Angeles, CA 90095.

Department of Biological Chemistry, University of California, Los Angeles, CA 90095.

出版信息

Proc Natl Acad Sci U S A. 2021 Dec 7;118(49). doi: 10.1073/pnas.2108884118.

Abstract

The relationship between sample thickness and quality of data obtained is investigated by microcrystal electron diffraction (MicroED). Several electron microscopy (EM) grids containing proteinase K microcrystals of similar sizes from the same crystallization batch were prepared. Each grid was transferred into a focused ion beam and a scanning electron microscope in which the crystals were then systematically thinned into lamellae between 95- and 1,650-nm thick. MicroED data were collected at either 120-, 200-, or 300-kV accelerating voltages. Lamellae thicknesses were expressed in multiples of the corresponding inelastic mean free path to allow the results from different acceleration voltages to be compared. The quality of the data and subsequently determined structures were assessed using standard crystallographic measures. Structures were reliably determined with similar quality from crystalline lamellae up to twice the inelastic mean free path. Lower resolution diffraction was observed at three times the mean free path for all three accelerating voltages, but the data quality was insufficient to yield structures. Finally, no coherent diffraction was observed from lamellae thicker than four times the calculated inelastic mean free path. This study benchmarks the ideal specimen thickness with implications for all cryo-EM methods.

摘要

通过微晶体电子衍射(MicroED)研究了样品厚度与所获得数据质量之间的关系。从同批结晶中准备了几个含有蛋白酶 K 微晶体的相似大小的电子显微镜(EM)网格。每个网格都转移到聚焦离子束和扫描电子显微镜中,然后将晶体系统地减薄成 95-1650nm 厚的薄片。在 120kV、200kV 或 300kV 的加速电压下收集 MicroED 数据。将薄片厚度表示为相应非弹性平均自由程的倍数,以便比较不同加速电压下的结果。使用标准晶体学指标评估数据质量和随后确定的结构。从晶体薄片中可靠地确定了相似质量的结构,其厚度是弹性平均自由程的两倍。对于所有三种加速电压,在弹性平均自由程的三倍处观察到较低分辨率的衍射,但数据质量不足以产生结构。最后,在计算出的非弹性平均自由程的四倍以上的薄片中没有观察到相干衍射。这项研究为所有冷冻电镜方法确定了理想的标本厚度基准。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f561/8670461/823e2fe0ebdc/pnas.202108884fig01.jpg

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